• using R Under development (unstable) (2025-08-09 r88544)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘DSMolgenisArmadillo/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘DSMolgenisArmadillo’ version ‘3.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘dsBaseClient’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘DSMolgenisArmadillo’ can be installed ... [12s/45s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/11s] OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... [3s/11s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/11s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/12s] OK
• checking loading without being on the library search path ... [2s/11s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s/51s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/10s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [79s/265s] ERROR   Running ‘testthat.R’ [79s/263s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(DSMolgenisArmadillo)   Loading required package: DSI   Loading required package: progress   Loading required package: R6   Loading required package: MolgenisAuth   > library(tibble)   >   > test_check("DSMolgenisArmadillo")   An object of class "ArmadilloCredentials"   Slot "access_token":   [1] "access456"      Slot "expires_in":   [1] 300      Slot "expires_at":   [1] "2025-08-09 09:01:41 BST"      Slot "id_token":   [1] "id123"      Slot "refresh_token":   [1] "refresh123"      Slot "token_type":   [1] "Bearer"      Slot "auth_type":   [1] "keycloak"      [ FAIL 2 | WARN 2 | SKIP 1 | PASS 396 ]      ══ Skipped tests (1) ═══════════════════════════════════════════════════════════   • I still don't get the .deparse arguments (1): 'test-utils.R:91:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-ArmadilloOAuth.R:86:3'): .refresh_token returns success message if new credentials are not null and option fusionauth ──   DSMolgenisArmadillo:::.refresh_token(server, credentials_in) not equal to `credentials_out`.   Attributes: < Component "expires_in": Mean relative difference: 0.3114827 >   ── Failure ('test-ArmadilloOAuth.R:143:3'): .refresh_token returns success message if new credentials are not null and option keycloak ──   DSMolgenisArmadillo:::.refresh_token(server, credentials_in) not equal to `credentials_out`.   Attributes: < Component "expires_at": Mean absolute difference: 4.965035 >      [ FAIL 2 | WARN 2 | SKIP 1 | PASS 396 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [24s/83s] OK
• checking PDF version of manual ... [8s/34s] OK
• checking HTML version of manual ... [2s/15s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR