* installing *source* package ‘BoolNet’ ...
** package ‘BoolNet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/BoolNet/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c attractor_info.c -o attractor_info.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c attractor_search_interface.c -o attractor_search_interface.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c common.c -o common.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c picosat.c -o picosat.o
picosat.c: In function 'relemhead':
picosat.c:3263:15: warning: variable 'fmt' set but not used [-Wunused-but-set-variable]
3263 | const char *fmt;
| ^~~
picosat.c: In function 'fanalyze':
picosat.c:3776:10: warning: unused variable 'start' [-Wunused-variable]
3776 | double start = picosat_time_stamp ();
| ^~~~~
picosat.c: In function 'picosat_mus_assumptions':
picosat.c:7377:24: warning: unused variable 'norig' [-Wunused-variable]
7377 | int i, j, ilit, len, norig = ps->alshead - ps->als, nwork, * work, res;
| ^~~~~
picosat.c: In function 'picosat_stats':
picosat.c:7991:12: warning: variable 'redlits' set but not used [-Wunused-but-set-variable]
7991 | unsigned redlits;
| ^~~~~~~
picosat.c: At top level:
picosat.c:6967:21: warning: 'enumstr' defined but not used [-Wunused-function]
6967 | static const char * enumstr (int i) {
| ^~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c probabilistic_boolean_network.c -o probabilistic_boolean_network.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c reconstruct_network.c -o reconstruct_network.o
reconstruct_network.c: In function 'reconstructNetwork_R':
reconstruct_network.c:1069:11: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
1069 | else
| ^~~~
reconstruct_network.c:1074:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
1074 | SETCADR(entrySXP,funcSXP);
| ^~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sat_search.c -o sat_search.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c statespace_search.c -o statespace_search.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c symbolic_network.c -o symbolic_network.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c symbolic_simulator.c -o symbolic_simulator.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o BoolNet.so attractor_info.o attractor_search_interface.o common.o init.o picosat.o probabilistic_boolean_network.o reconstruct_network.o sat_search.o statespace_search.o symbolic_network.o symbolic_simulator.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/BoolNet/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/BoolNet/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/BoolNet/src'
installing to /data/gannet/ripley/R/packages/tests-devel/BoolNet.Rcheck/00LOCK-BoolNet/00new/BoolNet/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BoolNet)