* installing *source* package ‘BoltzMM’ ...
** this is package ‘BoltzMM’ version ‘0.1.5’
** package ‘BoltzMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/BoltzMM/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c BoltzMM.cpp -o BoltzMM.o
BoltzMM.cpp:10:9: warning: ‘NDEBUG’ redefined
   10 | #define NDEBUG
      |         ^~~~~~
<command-line>: note: this is the location of the previous definition
BoltzMM.cpp: In function ‘double log_pl_calc(arma::mat, Rcpp::List)’:
BoltzMM.cpp:68:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   68 |   if(p+q != data.n_cols){
      |      ~~~~^~~~~~~~~~~~~~
BoltzMM.cpp: In function ‘double pfvbm(arma::vec, arma::vec, arma::mat)’:
BoltzMM.cpp:159:19: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  159 |     if(xval.n_elem!= n || Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
      |        ~~~~~~~~~~~^~~~
BoltzMM.cpp:159:38: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  159 |     if(xval.n_elem!= n || Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
      |                           ~~~~~~~~~~~^~~
BoltzMM.cpp:159:56: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  159 |     if(xval.n_elem!= n || Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
      |                                             ~~~~~~~~~~~^~~
BoltzMM.cpp: In function ‘arma::rowvec allpfvbm(arma::vec, arma::mat)’:
BoltzMM.cpp:193:19: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  193 |     if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
      |        ~~~~~~~~~~~^~~
BoltzMM.cpp:193:37: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  193 |     if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
      |                          ~~~~~~~~~~~^~~
BoltzMM.cpp: In function ‘arma::mat rfvbm(int, arma::vec, arma::mat)’:
BoltzMM.cpp:228:17: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  228 |   if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
      |      ~~~~~~~~~~~^~~
BoltzMM.cpp:228:35: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  228 |   if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
      |                        ~~~~~~~~~~~^~~
BoltzMM.cpp: In function ‘Rcpp::List fitfvbm(arma::mat, arma::vec, arma::mat, double, int)’:
BoltzMM.cpp:270:19: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  270 |     if(Mmat.n_rows!=D || Mmat.n_cols!=D || data.n_cols !=D || data.n_cols!=Mmat.n_cols || data.n_cols!=Mmat.n_rows || Mmat.n_rows!=Mmat.n_cols){
      |        ~~~~~~~~~~~^~~
BoltzMM.cpp:270:37: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  270 |     if(Mmat.n_rows!=D || Mmat.n_cols!=D || data.n_cols !=D || data.n_cols!=Mmat.n_cols || data.n_cols!=Mmat.n_rows || Mmat.n_rows!=Mmat.n_cols){
      |                          ~~~~~~~~~~~^~~
BoltzMM.cpp:270:56: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  270 |     if(Mmat.n_rows!=D || Mmat.n_cols!=D || data.n_cols !=D || data.n_cols!=Mmat.n_cols || data.n_cols!=Mmat.n_rows || Mmat.n_rows!=Mmat.n_cols){
      |                                            ~~~~~~~~~~~~^~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o BoltzMM.so BoltzMM.o RcppExports.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/BoltzMM/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/BoltzMM/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/BoltzMM/src'
installing to /data/gannet/ripley/R/packages/tests-devel/BoltzMM.Rcheck/00LOCK-BoltzMM/00new/BoltzMM/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BoltzMM)