Install log for 'BayesFactor'

* installing *source* package ‘BayesFactor’ ...
** package ‘BayesFactor’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/BayesFactor/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppCallback.cpp -o RcppCallback.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c corr.cpp -o corr.o
In file included from progress.h:15,
                 from corr.cpp:3:
interruptable_progress_monitor.h:102: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  102 | #pragma omp critical
      | 
interruptable_progress_monitor.h:148: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas]
  148 | #pragma omp atomic
      | 
interruptable_progress_monitor.h:154: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  154 | #pragma omp critical
      | 
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c dinvgamma.cpp -o dinvgamma.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c genhypergeo_series_pos.cpp -o genhypergeo_series_pos.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c interrupts.cpp -o interrupts.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c jzs_Gauss_approx_aov.cpp -o jzs_Gauss_approx_aov.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c jzs_Gibbs.cpp -o jzs_Gibbs.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c jzs_bf_samplers.cpp -o jzs_bf_samplers.o
In file included from progress.h:15,
                 from jzs_Gibbs.cpp:1:
interruptable_progress_monitor.h:102: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  102 | #pragma omp critical
      | 
interruptable_progress_monitor.h:148: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas]
  148 | #pragma omp atomic
      | 
interruptable_progress_monitor.h:154: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  154 | #pragma omp critical
      | 
In file included from progress.h:15,
                 from jzs_bf_samplers.cpp:1:
interruptable_progress_monitor.h:102: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  102 | #pragma omp critical
      | 
interruptable_progress_monitor.h:148: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas]
  148 | #pragma omp atomic
      | 
interruptable_progress_monitor.h:154: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  154 | #pragma omp critical
      | 
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c jzs_marg_like.cpp -o jzs_marg_like.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c linearRegGibbsRcpp.cpp -o linearRegGibbsRcpp.o
In file included from progress.h:15,
                 from linearRegGibbsRcpp.cpp:1:
interruptable_progress_monitor.h:102: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  102 | #pragma omp critical
      | 
interruptable_progress_monitor.h:148: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas]
  148 | #pragma omp atomic
      | 
interruptable_progress_monitor.h:154: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  154 | #pragma omp critical
      | 
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c logDeterminant.cpp -o logDeterminant.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c logRepresentedReal.cpp -o logRepresentedReal.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c logSummaryStats.cpp -o logSummaryStats.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c logUtility.cpp -o logUtility.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c metattest.cpp -o metattest.o
In file included from progress.h:15,
                 from metattest.cpp:1:
interruptable_progress_monitor.h:102: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  102 | #pragma omp critical
      | 
interruptable_progress_monitor.h:148: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas]
  148 | #pragma omp atomic
      | 
interruptable_progress_monitor.h:154: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  154 | #pragma omp critical
      | 
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c progress.cpp -o progress.o
In file included from progress.h:15,
                 from progress.cpp:11:
interruptable_progress_monitor.h:102: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  102 | #pragma omp critical
      | 
interruptable_progress_monitor.h:148: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas]
  148 | #pragma omp atomic
      | 
interruptable_progress_monitor.h:154: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  154 | #pragma omp critical
      | 
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c proportion.cpp -o proportion.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rmvnorm.cpp -o rmvnorm.o
In file included from progress.h:15,
                 from proportion.cpp:1:
interruptable_progress_monitor.h:102: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  102 | #pragma omp critical
      | 
interruptable_progress_monitor.h:148: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas]
  148 | #pragma omp atomic
      | 
interruptable_progress_monitor.h:154: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  154 | #pragma omp critical
      | 
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ttestIndepRcpp.cpp -o ttestIndepRcpp.o
In file included from progress.h:15,
                 from ttestIndepRcpp.cpp:1:
interruptable_progress_monitor.h:102: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  102 | #pragma omp critical
      | 
interruptable_progress_monitor.h:148: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas]
  148 | #pragma omp atomic
      | 
interruptable_progress_monitor.h:154: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  154 | #pragma omp critical
      | 
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ttestRcpp.cpp -o ttestRcpp.o
In file included from progress.h:15,
                 from ttestRcpp.cpp:1:
interruptable_progress_monitor.h:102: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  102 | #pragma omp critical
      | 
interruptable_progress_monitor.h:148: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas]
  148 | #pragma omp atomic
      | 
interruptable_progress_monitor.h:154: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  154 | #pragma omp critical
      | 
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o BayesFactor.so RcppCallback.o RcppExports.o corr.o dinvgamma.o genhypergeo_series_pos.o interrupts.o jzs_Gauss_approx_aov.o jzs_Gibbs.o jzs_bf_samplers.o jzs_marg_like.o linearRegGibbsRcpp.o logDeterminant.o logRepresentedReal.o logSummaryStats.o logUtility.o metattest.o progress.o proportion.o rmvnorm.o ttestIndepRcpp.o ttestRcpp.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/BayesFactor/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/BayesFactor/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/BayesFactor/src'
installing to /data/gannet/ripley/R/packages/tests-devel/BayesFactor.Rcheck/00LOCK-BayesFactor/00new/BayesFactor/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘which.max’ from package ‘base’ in package ‘BayesFactor’
Creating a generic function for ‘which.min’ from package ‘base’ in package ‘BayesFactor’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BayesFactor)