* installing *source* package ‘Amelia’ ...
** this is package ‘Amelia’ version ‘1.8.3’
** package ‘Amelia’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Amelia/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c em.cpp -o em.o
em.cpp: In function ‘SEXPREC* emcore(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
em.cpp:110:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  110 |       for (ss = st; ss < obsmat.n_rows; ss++) {
      |                     ~~~^~~~~~~~~~~~~~~
em.cpp:138:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  138 |       for (ss = st; ss < obsmat.n_rows; ss++) {
      |                     ~~~^~~~~~~~~~~~~~~
em.cpp: In function ‘void sweep(arma::mat&, arma::vec)’:
em.cpp:297:16: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  297 |   if (k.n_elem == p) {
      |       ~~~~~~~~~^~~~
em.cpp: In function ‘SEXPREC* ameliaImpute(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
em.cpp:388:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  388 |     for (ss = st; ss < obsmat.n_rows; ss++) {
      |                   ~~~^~~~~~~~~~~~~~~
em.cpp:419:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  419 |     for (ss = st; ss < obsmat.n_rows; ss++) {
      |                   ~~~^~~~~~~~~~~~~~~
em.cpp: In function ‘arma::mat resampler(arma::mat, arma::mat, arma::mat, arma::uvec, arma::mat, int)’:
em.cpp:494:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  494 |   for (int j = 0; j < bounds.n_rows; j++) {
      |                   ~~^~~~~~~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
em.cpp: In function ‘SEXPREC* ameliaImpute(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
em.cpp:465:40: warning: ‘maxsamples’ may be used uninitialized [-Wmaybe-uninitialized]
  465 |           xplay.row(is + p) = resampler(x.row(is + p), Ci, imputations.row(p), mispos, bounds, maxsamples);
      |                               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
em.cpp:330:7: note: ‘maxsamples’ was declared here
  330 |   int maxsamples;
      |       ^~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o Amelia.so em.o init.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Amelia/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Amelia/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Amelia/src'
installing to /data/gannet/ripley/R/packages/tests-devel/Amelia.Rcheck/00LOCK-Amelia/00new/Amelia/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Amelia)