* installing *source* package ‘APML0’ ... ** this is package ‘APML0’ version ‘0.11’ ** package ‘APML0’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/APML0/src' g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c APML0.cpp -o APML0.o g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o APML0.cpp: In function ‘Rcpp::List llLmC(Eigen::VectorXd, Eigen::MatrixXd, Eigen::VectorXd, Eigen::ArrayXd, double, int, Eigen::VectorXi, int, int, double, int)’: APML0.cpp:240:14: warning: unused variable ‘ia’ [-Wunused-variable] 240 | int i, j, ia=0; | ^~ APML0.cpp:241:16: warning: unused variable ‘rss1’ [-Wunused-variable] 241 | double rss0, rss1, RSS0; | ^~~~ APML0.cpp:243:14: warning: unused variable ‘dbMax’ [-Wunused-variable] 243 | double xr, dbMax; | ^~~~~ APML0.cpp: In function ‘Rcpp::List mleLmC(Eigen::MatrixXd, Eigen::VectorXd, Eigen::ArrayXd, double, int, Eigen::VectorXi, int, int, double, int)’: APML0.cpp:303:24: warning: unused variable ‘iadd’ [-Wunused-variable] 303 | int i, j, it=0, il, iadd, ia=0; | ^~~~ APML0.cpp:304:29: warning: variable ‘rss1’ set but not used [-Wunused-but-set-variable=] 304 | double zi, b0, db0, rss0, rss1, RSS0; | ^~~~ APML0.cpp:305:10: warning: unused variable ‘lambdaMax’ [-Wunused-variable] 305 | double lambdaMax; | ^~~~~~~~~ APML0.cpp:336:5: warning: label ‘local’ defined but not used [-Wunused-label] 336 | local: | ^~~~~ APML0.cpp: In function ‘Rcpp::List EnetLmC(Eigen::MatrixXd, Eigen::VectorXd, Eigen::VectorXd, double, double, Eigen::VectorXd, int, int, Eigen::ArrayXd, Eigen::ArrayXd, int, int, double, int)’: APML0.cpp:398:29: warning: variable ‘rss1’ set but not used [-Wunused-but-set-variable=] 398 | double zi, b0, db0, rss0, rss1, RSS0; | ^~~~ APML0.cpp: In function ‘Rcpp::List cvEnetLmC(Eigen::MatrixXd, Eigen::VectorXd, Eigen::VectorXd, double, double, Eigen::VectorXd, int, Eigen::VectorXd, Eigen::VectorXd, int, int, double, int, Eigen::MatrixXd, Eigen::VectorXd, Eigen::VectorXd, double, int)’: APML0.cpp:544:10: warning: unused variable ‘lambda2i’ [-Wunused-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~~~~~ APML0.cpp:544:24: warning: unused variable ‘obj0’ [-Wunused-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~ APML0.cpp:544:30: warning: unused variable ‘obj1’ [-Wunused-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~ APML0.cpp:544:42: warning: variable ‘rss1’ set but not used [-Wunused-but-set-variable=] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~ APML0.cpp:544:57: warning: unused variable ‘objQi’ [-Wunused-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~~ APML0.cpp:544:64: warning: unused variable ‘objQj’ [-Wunused-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~~ APML0.cpp: In function ‘Rcpp::List NetLmC(Eigen::MatrixXd&, Eigen::VectorXd&, Eigen::VectorXd, double, double, Eigen::VectorXd, int, int, Eigen::ArrayXd, Eigen::ArrayXd, Eigen::SparseMatrix&, Eigen::MatrixXd, Eigen::VectorXi, int, int, double, int)’: APML0.cpp:687:19: warning: unused variable ‘objQi’ [-Wunused-variable] 687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~~ APML0.cpp:687:30: warning: unused variable ‘objQj’ [-Wunused-variable] 687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~~ APML0.cpp:687:37: warning: unused variable ‘obj0’ [-Wunused-variable] 687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~ APML0.cpp:687:43: warning: unused variable ‘obj1’ [-Wunused-variable] 687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~ APML0.cpp:687:55: warning: variable ‘rss1’ set but not used [-Wunused-but-set-variable=] 687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~ APML0.cpp: In function ‘Rcpp::List cvNetLmC(Eigen::MatrixXd&, Eigen::VectorXd&, Eigen::VectorXd, double, double, Eigen::VectorXd, int, Eigen::VectorXd, Eigen::VectorXd, Eigen::SparseMatrix&, Eigen::MatrixXd, Eigen::VectorXi, int, int, double, int, Eigen::MatrixXd, Eigen::VectorXd, Eigen::VectorXd, double, int)’: APML0.cpp:842:10: warning: unused variable ‘lambda2i’ [-Wunused-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~~~~~ APML0.cpp:842:29: warning: unused variable ‘objQi’ [-Wunused-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~~ APML0.cpp:842:40: warning: unused variable ‘objQj’ [-Wunused-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~~ APML0.cpp:842:47: warning: unused variable ‘obj0’ [-Wunused-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~ APML0.cpp:842:53: warning: unused variable ‘obj1’ [-Wunused-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~ APML0.cpp:842:65: warning: variable ‘rss1’ set but not used [-Wunused-but-set-variable=] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~ g++ -std=gnu++20 -shared -L/usr/local/lib64 -o APML0.so APML0.o RcppExports.o make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/APML0/src' make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/APML0/src' make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/APML0/src' installing to /data/localhost/ripley/R/packages/tests-devel/APML0.Rcheck/00LOCK-APML0/00new/APML0/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (APML0)