* installing *source* package ‘APML0’ ...
** this is package ‘APML0’ version ‘0.11’
** package ‘APML0’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/APML0/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c APML0.cpp -o APML0.o
APML0.cpp: In function ‘Rcpp::List llLmC(Eigen::VectorXd, Eigen::MatrixXd, Eigen::VectorXd, Eigen::ArrayXd, double, int, Eigen::VectorXi, int, int, double, int)’:
APML0.cpp:240:14: warning: unused variable ‘ia’ [-Wunused-variable]
240 | int i, j, ia=0;
| ^~
APML0.cpp:241:16: warning: unused variable ‘rss1’ [-Wunused-variable]
241 | double rss0, rss1, RSS0;
| ^~~~
APML0.cpp:243:14: warning: unused variable ‘dbMax’ [-Wunused-variable]
243 | double xr, dbMax;
| ^~~~~
APML0.cpp: In function ‘Rcpp::List mleLmC(Eigen::MatrixXd, Eigen::VectorXd, Eigen::ArrayXd, double, int, Eigen::VectorXi, int, int, double, int)’:
APML0.cpp:303:24: warning: unused variable ‘iadd’ [-Wunused-variable]
303 | int i, j, it=0, il, iadd, ia=0;
| ^~~~
APML0.cpp:304:29: warning: variable ‘rss1’ set but not used [-Wunused-but-set-variable]
304 | double zi, b0, db0, rss0, rss1, RSS0;
| ^~~~
APML0.cpp:305:10: warning: unused variable ‘lambdaMax’ [-Wunused-variable]
305 | double lambdaMax;
| ^~~~~~~~~
APML0.cpp:336:5: warning: label ‘local’ defined but not used [-Wunused-label]
336 | local:
| ^~~~~
APML0.cpp: In function ‘Rcpp::List EnetLmC(Eigen::MatrixXd, Eigen::VectorXd, Eigen::VectorXd, double, double, Eigen::VectorXd, int, int, Eigen::ArrayXd, Eigen::ArrayXd, int, int, double, int)’:
APML0.cpp:398:29: warning: variable ‘rss1’ set but not used [-Wunused-but-set-variable]
398 | double zi, b0, db0, rss0, rss1, RSS0;
| ^~~~
APML0.cpp: In function ‘Rcpp::List cvEnetLmC(Eigen::MatrixXd, Eigen::VectorXd, Eigen::VectorXd, double, double, Eigen::VectorXd, int, Eigen::VectorXd, Eigen::VectorXd, int, int, double, int, Eigen::MatrixXd, Eigen::VectorXd, Eigen::VectorXd, double, int)’:
APML0.cpp:544:10: warning: unused variable ‘lambda2i’ [-Wunused-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~~~~~
APML0.cpp:544:24: warning: unused variable ‘obj0’ [-Wunused-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~
APML0.cpp:544:30: warning: unused variable ‘obj1’ [-Wunused-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~
APML0.cpp:544:42: warning: variable ‘rss1’ set but not used [-Wunused-but-set-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~
APML0.cpp:544:57: warning: unused variable ‘objQi’ [-Wunused-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~~
APML0.cpp:544:64: warning: unused variable ‘objQj’ [-Wunused-variable]
544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0;
| ^~~~~
APML0.cpp: In function ‘Rcpp::List NetLmC(Eigen::MatrixXd&, Eigen::VectorXd&, Eigen::VectorXd, double, double, Eigen::VectorXd, int, int, Eigen::ArrayXd, Eigen::ArrayXd, Eigen::SparseMatrix<double, 0, int>&, Eigen::MatrixXd, Eigen::VectorXi, int, int, double, int)’:
APML0.cpp:687:19: warning: unused variable ‘objQi’ [-Wunused-variable]
687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~~
APML0.cpp:687:30: warning: unused variable ‘objQj’ [-Wunused-variable]
687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~~
APML0.cpp:687:37: warning: unused variable ‘obj0’ [-Wunused-variable]
687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~
APML0.cpp:687:43: warning: unused variable ‘obj1’ [-Wunused-variable]
687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~
APML0.cpp:687:55: warning: variable ‘rss1’ set but not used [-Wunused-but-set-variable]
687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~
APML0.cpp: In function ‘Rcpp::List cvNetLmC(Eigen::MatrixXd&, Eigen::VectorXd&, Eigen::VectorXd, double, double, Eigen::VectorXd, int, Eigen::VectorXd, Eigen::VectorXd, Eigen::SparseMatrix<double, 0, int>&, Eigen::MatrixXd, Eigen::VectorXi, int, int, double, int, Eigen::MatrixXd, Eigen::VectorXd, Eigen::VectorXd, double, int)’:
APML0.cpp:842:10: warning: unused variable ‘lambda2i’ [-Wunused-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~~~~~
APML0.cpp:842:29: warning: unused variable ‘objQi’ [-Wunused-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~~
APML0.cpp:842:40: warning: unused variable ‘objQj’ [-Wunused-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~~
APML0.cpp:842:47: warning: unused variable ‘obj0’ [-Wunused-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~
APML0.cpp:842:53: warning: unused variable ‘obj1’ [-Wunused-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~
APML0.cpp:842:65: warning: variable ‘rss1’ set but not used [-Wunused-but-set-variable]
842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0;
| ^~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o APML0.so APML0.o RcppExports.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/APML0/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/APML0/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/APML0/src'
installing to /data/gannet/ripley/R/packages/tests-devel/APML0.Rcheck/00LOCK-APML0/00new/APML0/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (APML0)