Install log for 'xsdm'

* installing *source* package ‘xsdm’ ...
** this is package ‘xsdm’ version ‘1.0.2’
** package ‘xsdm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘clang version 23.1.0’
using C++17
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/xsdm/src'
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/ucminfcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/ucminfcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c expm_skew.cpp -o expm_skew.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/ucminfcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c like_ltsg.cpp -o like_ltsg.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/ucminfcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c log_prob_detect.cpp -o log_prob_detect.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/ucminfcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c loglik_bio.cpp -o loglik_bio.o
In file included from like_ltsg.cpp:2:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from like_ltsg.cpp:2:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/ucminfcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c loglik_math.cpp -o loglik_math.o
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/ucminfcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c loglik_math_xptr.cpp -o loglik_math_xptr.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/ucminfcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c loglik_math_xptr_cpp.cpp -o loglik_math_xptr_cpp.o
In file included from log_prob_detect.cpp:3:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:23:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
   89 | static void suspend_callback(void* user_callback, suspend_point sp) {
      |             ^~~~~~~~~~~~~~~~
In file included from log_prob_detect.cpp:3:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel.h:24:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/RcppParallel/TBB.h:16:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_for.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_for.h:27:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/partitioner.h:47:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
  130 |     d1::task* task_ptr_or_nullptr(F&& f){
      |               ^~~~~~~~~~~~~~~~~~~
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/ucminfcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c math_to_bio.cpp -o math_to_bio.o
2 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/ucminfcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23   -c solve_lsap.cpp -o solve_lsap.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o xsdm.so RcppExports.o expm_skew.o like_ltsg.o log_prob_detect.o loglik_bio.o loglik_math.o loglik_math_xptr.o loglik_math_xptr_cpp.o math_to_bio.o solve_lsap.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/xsdm/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/xsdm/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/xsdm/src'
installing to /data/localhost/ripley/R/packages/tests-clang/xsdm.Rcheck/00LOCK-xsdm/00new/xsdm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xsdm)