* installing *source* package ‘xoi’ ...
** this is package ‘xoi’ version ‘0.72’
** package ‘xoi’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/xoi/src'
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c GammaDensities.c -o GammaDensities.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c GammaIntegral.c -o GammaIntegral.o
In file included from GammaDensities.c:32:
In file included from ./GammaS.h:30:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
In file included from GammaIntegral.c:30:
In file included from ./GammaS.h:30:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c GammaLoglik.c -o GammaLoglik.o
In file included from GammaLoglik.c:30:
In file included from ./GammaS.h:30:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c GammaS.c -o GammaS.o
In file included from GammaS.c:31:
In file included from ./GammaS.h:30:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c GammaUtil.c -o GammaUtil.o
In file included from GammaUtil.c:19:
In file included from ./GammaS.h:30:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c R_init.c -o R_init.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c chiasma.c -o chiasma.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c coi_um.c -o coi_um.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c coincidence.c -o coincidence.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fitStahl.c -o fitStahl.o
In file included from fitStahl.c:33:
In file included from ./GammaS.h:30:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c kfunc.c -o kfunc.o
In file included from kfunc.c:30:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c kwak_coincidence.c -o kwak_coincidence.o
In file included from kwak_coincidence.c:6:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c kwak_get_n_xo.c -o kwak_get_n_xo.o
In file included from kwak_get_n_xo.c:6:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c kwak_identify.c -o kwak_identify.o
In file included from kwak_identify.c:6:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c kwak_intensity.c -o kwak_intensity.o
In file included from kwak_intensity.c:6:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c recrate.c -o recrate.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c simStahl.c -o simStahl.o
In file included from simStahl.c:30:
In file included from ./GammaS.h:30:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c stahl_util.c -o stahl_util.o
In file included from stahl_util.c:19:
In file included from ./GammaS.h:30:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
31 | #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed
| ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c zeroin.c -o zeroin.o
/usr/local/clang21/bin/clang -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o xoi.so GammaDensities.o GammaIntegral.o GammaLoglik.o GammaS.o GammaUtil.o R_init.o chiasma.o coi_um.o coincidence.o fitStahl.o kfunc.o kwak_coincidence.o kwak_get_n_xo.o kwak_identify.o kwak_intensity.o recrate.o simStahl.o stahl_util.o zeroin.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/xoi/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/xoi/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/xoi/src'
installing to /data/gannet/ripley/R/packages/tests-clang/xoi.Rcheck/00LOCK-xoi/00new/xoi/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xoi)