* installing *source* package ‘xgboost’ ...
** package ‘xgboost’ successfully unpacked and MD5 sums checked
** using staged installation
checking Backtrace lib...
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /usr/local/clang17/bin/clang++ -std=gnu++17 accepts -g... yes
checking for /usr/local/clang17/bin/clang++ -std=gnu++17 option to enable C++11 features... none needed
checking for backtrace in -lexecinfo... no
checking endian...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
Makevars:17: -DXGBOOST_STRICT_R_MODE=1
Makevars:17: -DDMLC_LOG_BEFORE_THROW=0
Makevars:17: -DDMLC_ENABLE_STD_THREAD=1
Makevars:17: -DDMLC_DISABLE_STDIN=1
Makevars:17: -DDMLC_LOG_CUSTOMIZE=1
Makevars:17: -DXGBOOST_CUSTOMIZE_LOGGER=1
Makevars:17: -DRABIT_CUSTOMIZE_MSG_
using C compiler: ‘clang version 17.0.5’
using C++ compiler: ‘clang version 17.0.5’
using C++17
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/xgboost/src'
Makevars:17: -DXGBOOST_STRICT_R_MODE=1
Makevars:17: -DDMLC_LOG_BEFORE_THROW=0
Makevars:17: -DDMLC_ENABLE_STD_THREAD=1
Makevars:17: -DDMLC_DISABLE_STDIN=1
Makevars:17: -DDMLC_LOG_CUSTOMIZE=1
Makevars:17: -DXGBOOST_CUSTOMIZE_LOGGER=1
Makevars:17: -DRABIT_CUSTOMIZE_MSG_
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c xgboost_R.cc -o xgboost_R.o
xgboost_R.cc:70:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
70 | CHECK_CALL(XGDMatrixFree(R_ExternalPtrAddr(ext)));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:70:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:72:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
72 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:72:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:77:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
77 | CHECK_CALL(XGBSetGlobalConfig(CHAR(asChar(json_str))));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:77:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:78:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
78 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:78:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:85:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
85 | CHECK_CALL(XGBGetGlobalConfig(&json_str));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:85:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:86:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
86 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:86:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:94:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
94 | CHECK_CALL(XGDMatrixCreateFromFile(CHAR(asChar(fname)), asInteger(silent), &handle));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:94:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:97:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
97 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:97:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:125:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
125 | CHECK_CALL(XGDMatrixCreateFromMat_omp(BeginPtr(data), nrow, ncol,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
126 | asReal(missing), &handle, threads));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:125:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:129:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
129 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:129:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:157:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
157 | CHECK_CALL(XGDMatrixCreateFromCSCEx(BeginPtr(col_ptr_), BeginPtr(indices_),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
158 | BeginPtr(data_), nindptr, ndata,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
159 | nrow, &handle));
| ~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:157:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:162:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
162 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:162:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:190:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
190 | CHECK_CALL(XGDMatrixCreateFromCSREx(BeginPtr(row_ptr_), BeginPtr(indices_),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
191 | BeginPtr(data_), nindptr, ndata,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
192 | ncol, &handle));
| ~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:190:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:195:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
195 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:195:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:209:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
209 | CHECK_CALL(XGDMatrixSliceDMatrixEx(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
210 | BeginPtr(idxvec), len,
| ~~~~~~~~~~~~~~~~~~~~~~
211 | &res,
| ~~~~~
212 | 0));
| ~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:209:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:215:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
215 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:215:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:222:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
222 | CHECK_CALL(XGDMatrixSaveBinary(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
223 | CHAR(asChar(fname)),
| ~~~~~~~~~~~~~~~~~~~~
224 | asInteger(silent)));
| ~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:222:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:225:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
225 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:225:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:239:5: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
239 | CHECK_CALL(
| ^~~~~~~~~~~
240 | XGDMatrixSetUIntInfo(R_ExternalPtrAddr(handle), CHAR(asChar(field)), BeginPtr(vec), len));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:239:5: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:245:5: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
245 | CHECK_CALL(
| ^~~~~~~~~~~
246 | XGDMatrixSetFloatInfo(R_ExternalPtrAddr(handle), CHAR(asChar(field)), BeginPtr(vec), len));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:245:5: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:248:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
248 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:248:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:267:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
267 | CHECK_CALL(XGDMatrixSetStrFeatureInfo(R_ExternalPtrAddr(handle), name, vec.data(), len));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:267:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:268:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
268 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:268:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:288:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
288 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:288:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:298:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
298 | CHECK_CALL(XGDMatrixGetFloatInfo(R_ExternalPtrAddr(handle), CHAR(asChar(field)), &olen, &res));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:298:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:303:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
303 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:303:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:311:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
311 | CHECK_CALL(XGDMatrixNumRow(R_ExternalPtrAddr(handle), &nrow));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:311:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:312:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
312 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:312:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:319:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
319 | CHECK_CALL(XGDMatrixNumCol(R_ExternalPtrAddr(handle), &ncol));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:319:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:320:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
320 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:320:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:327:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
327 | CHECK_CALL(XGBoosterFree(R_ExternalPtrAddr(ext)));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:327:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:340:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
340 | CHECK_CALL(XGBoosterCreate(BeginPtr(dvec), dvec.size(), &handle));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:340:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:343:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
343 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:343:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:356:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
356 | CHECK_CALL(XGBoosterCreate(BeginPtr(dvec), dvec.size(), &handle));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:356:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:359:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
359 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:359:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:365:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
365 | CHECK_CALL(XGBoosterSetParam(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
366 | CHAR(asChar(name)),
| ~~~~~~~~~~~~~~~~~~~
367 | CHAR(asChar(val))));
| ~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:365:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:368:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
368 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:368:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:374:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
374 | CHECK_CALL(XGBoosterUpdateOneIter(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
375 | asInteger(iter),
| ~~~~~~~~~~~~~~~~
376 | R_ExternalPtrAddr(dtrain)));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:374:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:377:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
377 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:377:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:392:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
392 | CHECK_CALL(XGBoosterBoostOneIter(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
393 | R_ExternalPtrAddr(dtrain),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
394 | BeginPtr(tgrad), BeginPtr(thess),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
395 | len));
| ~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:392:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:396:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
396 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:396:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:416:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
416 | CHECK_CALL(XGBoosterEvalOneIter(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
417 | asInteger(iter),
| ~~~~~~~~~~~~~~~~
418 | BeginPtr(vec_dmats),
| ~~~~~~~~~~~~~~~~~~~~
419 | BeginPtr(vec_sptr),
| ~~~~~~~~~~~~~~~~~~~
420 | len, &ret));
| ~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:416:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:421:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
421 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:421:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:431:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
431 | CHECK_CALL(XGBoosterPredict(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
432 | R_ExternalPtrAddr(dmat),
| ~~~~~~~~~~~~~~~~~~~~~~~~
433 | asInteger(option_mask),
| ~~~~~~~~~~~~~~~~~~~~~~~
434 | asInteger(ntree_limit),
| ~~~~~~~~~~~~~~~~~~~~~~~
435 | asInteger(training),
| ~~~~~~~~~~~~~~~~~~~~
436 | &olen, &res));
| ~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:431:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:441:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
441 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:441:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:457:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
457 | CHECK_CALL(XGBoosterPredictFromDMatrix(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
458 | R_ExternalPtrAddr(dmat), c_json_config,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
459 | &out_shape, &out_dim, &out_result));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:457:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:478:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
478 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:478:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:486:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
486 | CHECK_CALL(XGBoosterLoadModel(R_ExternalPtrAddr(handle), CHAR(asChar(fname))));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:486:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:487:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
487 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:487:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:493:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
493 | CHECK_CALL(XGBoosterSaveModel(R_ExternalPtrAddr(handle), CHAR(asChar(fname))));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:493:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:494:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
494 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:494:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:500:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
500 | CHECK_CALL(XGBoosterLoadModelFromBuffer(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
501 | RAW(raw),
| ~~~~~~~~~
502 | length(raw)));
| ~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:500:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:503:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
503 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:503:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:513:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
513 | CHECK_CALL(XGBoosterSaveModelToBuffer(R_ExternalPtrAddr(handle), c_json_config, &olen, &raw))
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:513:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:518:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
518 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:518:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:527:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
527 | CHECK_CALL(XGBoosterSaveJsonConfig(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
528 | &len,
| ~~~~~
529 | &ret));
| ~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:527:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:530:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
530 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:530:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:536:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
536 | CHECK_CALL(XGBoosterLoadJsonConfig(R_ExternalPtrAddr(handle), CHAR(asChar(value))));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:536:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:537:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
537 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:537:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:546:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
546 | CHECK_CALL(XGBoosterSerializeToBuffer(R_ExternalPtrAddr(handle), &out_len, &raw));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:546:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:551:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
551 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:551:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:558:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
558 | CHECK_CALL(XGBoosterUnserializeFromBuffer(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
559 | RAW(raw),
| ~~~~~~~~~
560 | length(raw)));
| ~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:558:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:561:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
561 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:561:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:571:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
571 | CHECK_CALL(XGBoosterDumpModelEx(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
572 | CHAR(asChar(fmap)),
| ~~~~~~~~~~~~~~~~~~~
573 | asInteger(with_stats),
| ~~~~~~~~~~~~~~~~~~~~~~
574 | fmt,
| ~~~~
575 | &olen, &res));
| ~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:571:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:597:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
597 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:597:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:607:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
607 | CHECK_CALL(XGBoosterGetAttr(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
608 | CHAR(asChar(name)),
| ~~~~~~~~~~~~~~~~~~~
609 | &val,
| ~~~~~
610 | &success));
| ~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:607:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:617:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
617 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:617:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:625:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
625 | CHECK_CALL(XGBoosterSetAttr(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
626 | CHAR(asChar(name)), v));
| ~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:625:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:627:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
627 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:627:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:636:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
636 | CHECK_CALL(XGBoosterGetAttrNames(R_ExternalPtrAddr(handle),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
637 | &len, &res));
| ~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:636:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:646:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
646 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:646:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
xgboost_R.cc:666:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
666 | CHECK_CALL(XGBoosterFeatureScore(R_ExternalPtrAddr(handle), c_json_config,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
667 | &out_n_features, &out_features,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
668 | &out_dim, &out_shape, &out_scores));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^~~~~~~~~~~~~~~~~
xgboost_R.cc:666:3: note: treat the string as an argument to avoid this
xgboost_R.cc:44:11: note: expanded from macro 'CHECK_CALL'
44 | error(XGBGetLastError()); \
| ^
xgboost_R.cc:692:3: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
692 | R_API_END();
| ^~~~~~~~~~~
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^~~~~~~~
xgboost_R.cc:692:3: note: treat the string as an argument to avoid this
xgboost_R.cc:35:11: note: expanded from macro 'R_API_END'
35 | error(e.what()); \
| ^
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c xgboost_custom.cc -o xgboost_custom.o
73 warnings generated.
/usr/local/clang17/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/metric/metric.cc -o src/metric/metric.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/metric/elementwise_metric.cc -o src/metric/elementwise_metric.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/metric/multiclass_metric.cc -o src/metric/multiclass_metric.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/metric/rank_metric.cc -o src/metric/rank_metric.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/metric/auc.cc -o src/metric/auc.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/metric/survival_metric.cc -o src/metric/survival_metric.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/objective/objective.cc -o src/objective/objective.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/objective/regression_obj.cc -o src/objective/regression_obj.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/objective/multiclass_obj.cc -o src/objective/multiclass_obj.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/objective/rank_obj.cc -o src/objective/rank_obj.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/objective/hinge.cc -o src/objective/hinge.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/objective/aft_obj.cc -o src/objective/aft_obj.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/objective/adaptive.cc -o src/objective/adaptive.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/gbm/gbm.cc -o src/gbm/gbm.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/gbm/gbtree.cc -o src/gbm/gbtree.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/gbm/gbtree_model.cc -o src/gbm/gbtree_model.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/gbm/gblinear.cc -o src/gbm/gblinear.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/gbm/gblinear_model.cc -o src/gbm/gblinear_model.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/data/simple_dmatrix.cc -o src/data/simple_dmatrix.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/data/data.cc -o src/data/data.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/data/sparse_page_raw_format.cc -o src/data/sparse_page_raw_format.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/data/ellpack_page.cc -o src/data/ellpack_page.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/data/gradient_index.cc -o src/data/gradient_index.o
In file included from src/data/data.cc:22:
In file included from src/data/./sparse_page_dmatrix.h:19:
In file included from src/data/./ellpack_page_source.h:15:
In file included from src/data/./sparse_page_source.h:21:
In file included from src/data/./sparse_page_writer.h:20:
./dmlc-core/include/dmlc/concurrency.h:36:22: warning: braces around scalar initializer [-Wbraced-scalar-init]
36 | Spinlock() : lock_(ATOMIC_FLAG_INIT) {
| ^~~~~~~~~~~~~~~~
/usr/local/clang17/bin/../include/c++/v1/__atomic/atomic_init.h:18:26: note: expanded from macro 'ATOMIC_FLAG_INIT'
18 | #define ATOMIC_FLAG_INIT {false}
| ^~~~~~~
In file included from src/data/sparse_page_raw_format.cc:10:
In file included from src/data/./sparse_page_writer.h:20:
./dmlc-core/include/dmlc/concurrency.h:36:22: warning: braces around scalar initializer [-Wbraced-scalar-init]
36 | Spinlock() : lock_(ATOMIC_FLAG_INIT) {
| ^~~~~~~~~~~~~~~~
/usr/local/clang17/bin/../include/c++/v1/__atomic/atomic_init.h:18:26: note: expanded from macro 'ATOMIC_FLAG_INIT'
18 | #define ATOMIC_FLAG_INIT {false}
| ^~~~~~~
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/data/gradient_index_page_source.cc -o src/data/gradient_index_page_source.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/data/gradient_index_format.cc -o src/data/gradient_index_format.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/data/sparse_page_dmatrix.cc -o src/data/sparse_page_dmatrix.o
1 warning generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/data/proxy_dmatrix.cc -o src/data/proxy_dmatrix.o
In file included from src/data/gradient_index_format.cc:4:
In file included from src/data/sparse_page_writer.h:20:
./dmlc-core/include/dmlc/concurrency.h:36:22: warning: braces around scalar initializer [-Wbraced-scalar-init]
36 | Spinlock() : lock_(ATOMIC_FLAG_INIT) {
| ^~~~~~~~~~~~~~~~
/usr/local/clang17/bin/../include/c++/v1/__atomic/atomic_init.h:18:26: note: expanded from macro 'ATOMIC_FLAG_INIT'
18 | #define ATOMIC_FLAG_INIT {false}
| ^~~~~~~
In file included from src/data/gradient_index_page_source.cc:4:
In file included from src/data/gradient_index_page_source.h:11:
In file included from src/data/sparse_page_source.h:21:
In file included from src/data/sparse_page_writer.h:20:
./dmlc-core/include/dmlc/concurrency.h:36:22: warning: braces around scalar initializer [-Wbraced-scalar-init]
36 | Spinlock() : lock_(ATOMIC_FLAG_INIT) {
| ^~~~~~~~~~~~~~~~
/usr/local/clang17/bin/../include/c++/v1/__atomic/atomic_init.h:18:26: note: expanded from macro 'ATOMIC_FLAG_INIT'
18 | #define ATOMIC_FLAG_INIT {false}
| ^~~~~~~
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/data/iterative_dmatrix.cc -o src/data/iterative_dmatrix.o
In file included from src/data/sparse_page_dmatrix.cc:7:
In file included from src/data/./sparse_page_dmatrix.h:19:
In file included from src/data/./ellpack_page_source.h:15:
In file included from src/data/./sparse_page_source.h:21:
In file included from src/data/./sparse_page_writer.h:20:
./dmlc-core/include/dmlc/concurrency.h:36:22: warning: braces around scalar initializer [-Wbraced-scalar-init]
36 | Spinlock() : lock_(ATOMIC_FLAG_INIT) {
| ^~~~~~~~~~~~~~~~
/usr/local/clang17/bin/../include/c++/v1/__atomic/atomic_init.h:18:26: note: expanded from macro 'ATOMIC_FLAG_INIT'
18 | #define ATOMIC_FLAG_INIT {false}
| ^~~~~~~
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/predictor/predictor.cc -o src/predictor/predictor.o
1 warning generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/predictor/cpu_predictor.cc -o src/predictor/cpu_predictor.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/tree/constraints.cc -o src/tree/constraints.o
1 warning generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/tree/param.cc -o src/tree/param.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/tree/tree_model.cc -o src/tree/tree_model.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/tree/tree_updater.cc -o src/tree/tree_updater.o
1 warning generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/tree/updater_approx.cc -o src/tree/updater_approx.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/tree/updater_colmaker.cc -o src/tree/updater_colmaker.o
1 warning generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/tree/updater_prune.cc -o src/tree/updater_prune.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/tree/updater_quantile_hist.cc -o src/tree/updater_quantile_hist.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/tree/updater_refresh.cc -o src/tree/updater_refresh.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/tree/updater_sync.cc -o src/tree/updater_sync.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/linear/linear_updater.cc -o src/linear/linear_updater.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/linear/updater_coordinate.cc -o src/linear/updater_coordinate.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/linear/updater_shotgun.cc -o src/linear/updater_shotgun.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/learner.cc -o src/learner.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/logging.cc -o src/logging.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/global_config.cc -o src/global_config.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/collective/communicator.cc -o src/collective/communicator.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/collective/socket.cc -o src/collective/socket.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/charconv.cc -o src/common/charconv.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/column_matrix.cc -o src/common/column_matrix.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/common.cc -o src/common/common.o
In file included from src/collective/socket.cc:4:
./include/xgboost/collective/socket.h:65:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
65 | #if xgboost_IS_MINGW()
| ^
./include/xgboost/collective/socket.h:21:28: note: expanded from macro 'xgboost_IS_MINGW'
21 | #define xgboost_IS_MINGW() defined(__MINGW32__)
| ^
./include/xgboost/collective/socket.h:147:24: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
147 | #if defined(_WIN32) && xgboost_IS_MINGW()
| ^
./include/xgboost/collective/socket.h:21:28: note: expanded from macro 'xgboost_IS_MINGW'
21 | #define xgboost_IS_MINGW() defined(__MINGW32__)
| ^
./include/xgboost/collective/socket.h:511:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
511 | #if xgboost_IS_MINGW()
| ^
./include/xgboost/collective/socket.h:21:28: note: expanded from macro 'xgboost_IS_MINGW'
21 | #define xgboost_IS_MINGW() defined(__MINGW32__)
| ^
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/hist_util.cc -o src/common/hist_util.o
3 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/host_device_vector.cc -o src/common/host_device_vector.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/io.cc -o src/common/io.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/json.cc -o src/common/json.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/numeric.cc -o src/common/numeric.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/pseudo_huber.cc -o src/common/pseudo_huber.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/quantile.cc -o src/common/quantile.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/random.cc -o src/common/random.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/survival_util.cc -o src/common/survival_util.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/threading_utils.cc -o src/common/threading_utils.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/timer.cc -o src/common/timer.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/common/version.cc -o src/common/version.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/c_api/c_api.cc -o src/c_api/c_api.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c src/c_api/c_api_error.cc -o src/c_api/c_api_error.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c amalgamation/dmlc-minimum0.cc -o amalgamation/dmlc-minimum0.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rabit/src/engine.cc -o rabit/src/engine.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rabit/src/rabit_c_api.cc -o rabit/src/rabit_c_api.o
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -isystem /usr/local/clang17/include -I/usr/local/clang/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rabit/src/allreduce_base.cc -o rabit/src/allreduce_base.o
In file included from rabit/src/engine.cc:14:
In file included from rabit/src/allreduce_base.h:22:
In file included from ./rabit/include/rabit/internal/socket.h:8:
./include/xgboost/collective/socket.h:65:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
65 | #if xgboost_IS_MINGW()
| ^
./include/xgboost/collective/socket.h:21:28: note: expanded from macro 'xgboost_IS_MINGW'
21 | #define xgboost_IS_MINGW() defined(__MINGW32__)
| ^
./include/xgboost/collective/socket.h:147:24: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
147 | #if defined(_WIN32) && xgboost_IS_MINGW()
| ^
./include/xgboost/collective/socket.h:21:28: note: expanded from macro 'xgboost_IS_MINGW'
21 | #define xgboost_IS_MINGW() defined(__MINGW32__)
| ^
./include/xgboost/collective/socket.h:511:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
511 | #if xgboost_IS_MINGW()
| ^
./include/xgboost/collective/socket.h:21:28: note: expanded from macro 'xgboost_IS_MINGW'
21 | #define xgboost_IS_MINGW() defined(__MINGW32__)
| ^
In file included from rabit/src/engine.cc:14:
In file included from rabit/src/allreduce_base.h:22:
./rabit/include/rabit/internal/socket.h:46:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
46 | #if IS_MINGW() && !defined(POLLRDNORM) && !defined(POLLRDBAND)
| ^
./rabit/include/rabit/internal/socket.h:44:20: note: expanded from macro 'IS_MINGW'
44 | #define IS_MINGW() defined(__MINGW32__)
| ^
./rabit/include/rabit/internal/socket.h:190:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
190 | #if IS_MINGW() && !defined(POLLRDNORM) && !defined(POLLRDBAND)
| ^
./rabit/include/rabit/internal/socket.h:44:20: note: expanded from macro 'IS_MINGW'
44 | #define IS_MINGW() defined(__MINGW32__)
| ^
In file included from rabit/src/allreduce_base.cc:14:
In file included from rabit/src/allreduce_base.h:22:
In file included from ./rabit/include/rabit/internal/socket.h:8:
./include/xgboost/collective/socket.h:65:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
65 | #if xgboost_IS_MINGW()
| ^
./include/xgboost/collective/socket.h:21:28: note: expanded from macro 'xgboost_IS_MINGW'
21 | #define xgboost_IS_MINGW() defined(__MINGW32__)
| ^
./include/xgboost/collective/socket.h:147:24: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
147 | #if defined(_WIN32) && xgboost_IS_MINGW()
| ^
./include/xgboost/collective/socket.h:21:28: note: expanded from macro 'xgboost_IS_MINGW'
21 | #define xgboost_IS_MINGW() defined(__MINGW32__)
| ^
./include/xgboost/collective/socket.h:511:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
511 | #if xgboost_IS_MINGW()
| ^
./include/xgboost/collective/socket.h:21:28: note: expanded from macro 'xgboost_IS_MINGW'
21 | #define xgboost_IS_MINGW() defined(__MINGW32__)
| ^
In file included from rabit/src/allreduce_base.cc:14:
In file included from rabit/src/allreduce_base.h:22:
./rabit/include/rabit/internal/socket.h:46:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
46 | #if IS_MINGW() && !defined(POLLRDNORM) && !defined(POLLRDBAND)
| ^
./rabit/include/rabit/internal/socket.h:44:20: note: expanded from macro 'IS_MINGW'
44 | #define IS_MINGW() defined(__MINGW32__)
| ^
./rabit/include/rabit/internal/socket.h:190:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
190 | #if IS_MINGW() && !defined(POLLRDNORM) && !defined(POLLRDBAND)
| ^
./rabit/include/rabit/internal/socket.h:44:20: note: expanded from macro 'IS_MINGW'
44 | #define IS_MINGW() defined(__MINGW32__)
| ^
5 warnings generated.
5 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang17/lib -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o xgboost.so ./xgboost_R.o ./xgboost_custom.o ./init.o ./src/metric/metric.o ./src/metric/elementwise_metric.o ./src/metric/multiclass_metric.o ./src/metric/rank_metric.o ./src/metric/auc.o ./src/metric/survival_metric.o ./src/objective/objective.o ./src/objective/regression_obj.o ./src/objective/multiclass_obj.o ./src/objective/rank_obj.o ./src/objective/hinge.o ./src/objective/aft_obj.o ./src/objective/adaptive.o ./src/gbm/gbm.o ./src/gbm/gbtree.o ./src/gbm/gbtree_model.o ./src/gbm/gblinear.o ./src/gbm/gblinear_model.o ./src/data/simple_dmatrix.o ./src/data/data.o ./src/data/sparse_page_raw_format.o ./src/data/ellpack_page.o ./src/data/gradient_index.o ./src/data/gradient_index_page_source.o ./src/data/gradient_index_format.o ./src/data/sparse_page_dmatrix.o ./src/data/proxy_dmatrix.o ./src/data/iterative_dmatrix.o ./src/predictor/predictor.o ./src/predictor/cpu_predictor.o ./src/tree/constraints.o ./src/tree/param.o ./src/tree/tree_model.o ./src/tree/tree_updater.o ./src/tree/updater_approx.o ./src/tree/updater_colmaker.o ./src/tree/updater_prune.o ./src/tree/updater_quantile_hist.o ./src/tree/updater_refresh.o ./src/tree/updater_sync.o ./src/linear/linear_updater.o ./src/linear/updater_coordinate.o ./src/linear/updater_shotgun.o ./src/learner.o ./src/logging.o ./src/global_config.o ./src/collective/communicator.o ./src/collective/socket.o ./src/common/charconv.o ./src/common/column_matrix.o ./src/common/common.o ./src/common/hist_util.o ./src/common/host_device_vector.o ./src/common/io.o ./src/common/json.o ./src/common/numeric.o ./src/common/pseudo_huber.o ./src/common/quantile.o ./src/common/random.o ./src/common/survival_util.o ./src/common/threading_utils.o ./src/common/timer.o ./src/common/version.o ./src/c_api/c_api.o ./src/c_api/c_api_error.o ./amalgamation/dmlc-minimum0.o ./rabit/src/engine.o ./rabit/src/rabit_c_api.o ./rabit/src/allreduce_base.o -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/xgboost/src'
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/xgboost/src'
Makevars:17: -DXGBOOST_STRICT_R_MODE=1
Makevars:17: -DDMLC_LOG_BEFORE_THROW=0
Makevars:17: -DDMLC_ENABLE_STD_THREAD=1
Makevars:17: -DDMLC_DISABLE_STDIN=1
Makevars:17: -DDMLC_LOG_CUSTOMIZE=1
Makevars:17: -DXGBOOST_CUSTOMIZE_LOGGER=1
Makevars:17: -DRABIT_CUSTOMIZE_MSG_
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/xgboost/src'
installing to /data/gannet/ripley/R/packages/tests-clang/xgboost.Rcheck/00LOCK-xgboost/00new/xgboost/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xgboost)