* installing *source* package ‘vegan’ ...
** this is package ‘vegan’ version ‘2.7-3’
** package ‘vegan’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
using Fortran compiler: ‘flang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/vegan/src'
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c data2hill.c -o data2hill.o
flang-22 -fpic -O2 -pedantic -c decorana.f -o decorana.o
./decorana.f:206:12: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 1.10000002384185791015625_4 is inexact [-Wreal-constant-widening]
y(1)=1.1
^^^
./decorana.f:209:11: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 4.999999873689375817775726318359375e-6_4 is inexact [-Wreal-constant-widening]
tol=0.000005
^^^^^^^^
./decorana.f:329:11: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 1.00000001490116119384765625e-1_4 is inexact [-Wreal-constant-widening]
ax2=0.1
^^^
./decorana.f:330:11: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 9.99999977648258209228515625e-3_4 is inexact [-Wreal-constant-widening]
ax3=0.01
^^^^
./decorana.f:331:11: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 1.000000047497451305389404296875e-3_4 is inexact [-Wreal-constant-widening]
ax4=0.001
^^^^^
./decorana.f:642:38: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 9.9989998340606689453125e-1_4 is inexact [-Wreal-constant-widening]
if(sqcorr.gt.0.9999) sqcorr=0.9999
^^^^^^
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c getF.c -o getF.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c goffactor.c -o goffactor.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
flang-22 -fpic -O2 -pedantic -c monoMDS.f -o monoMDS.o
./monoMDS.f:165:14: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 1.10000002384185791015625_4 is inexact [-Wreal-constant-widening]
STRINC=1.1
^^^
./monoMDS.f:169:14: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 8.00000011920928955078125e-1_4 is inexact [-Wreal-constant-widening]
SRATAV=0.8
^^^
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c nestedness.c -o nestedness.o
flang-22 -fpic -O2 -pedantic -c ordering.f -o ordering.o
./ordering.f:12:15: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 9.999999974752427078783512115478515625e-7_4 is inexact [-Wreal-constant-widening]
epsilon=0.000001
^^^^^^^^
./ordering.f:13:15: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 9.999999974752427078783512115478515625e-7_4 is inexact [-Wreal-constant-widening]
toler= 0.000001
^^^^^^^^
./ordering.f:15:18: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 9.99999974737875163555145263671875e-6_4 is inexact [-Wreal-constant-widening]
epsilon=0.00001
^^^^^^^
./ordering.f:16:18: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 9.99999974737875163555145263671875e-6_4 is inexact [-Wreal-constant-widening]
toler= 0.00001
^^^^^^^
./ordering.f:19:18: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 9.99999974737875163555145263671875e-5_4 is inexact [-Wreal-constant-widening]
epsilon=0.0001
^^^^^^
./ordering.f:20:18: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 9.99999974737875163555145263671875e-5_4 is inexact [-Wreal-constant-widening]
toler= 0.0001
^^^^^^
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c pnpoly.c -o pnpoly.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c stepacross.c -o stepacross.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vegdist.c -o vegdist.o
clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o vegan.so data2hill.o decorana.o getF.o goffactor.o init.o monoMDS.o nestedness.o ordering.o pnpoly.o stepacross.o vegdist.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/vegan/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/vegan/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/vegan/src'
installing to /data/gannet/ripley/R/packages/tests-clang/vegan.Rcheck/00LOCK-vegan/00new/vegan/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (vegan)