- using R Under development (unstable) (2025-12-02 r89084)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 21.1.6
flang version 21.1.6
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘trouBBlme4SolveR/DESCRIPTION’ ... OK
- this is package ‘trouBBlme4SolveR’ version ‘0.1.3’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
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- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘trouBBlme4SolveR’ can be installed ... [16s/61s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s/11s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/10s] OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... [5s/11s] OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
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- checking R code for possible problems ... [22s/43s] OK
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- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
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- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [6s/11s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [182s/274s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rnw’ using Sweave
Loading required package: Matrix
Warning in (function (fn, par, lower = rep.int(-Inf, n), upper = rep.int(Inf, :
failure to converge in 10000 evaluations
Warning in optwrap(optimizer, devfun, start, rho$lower, control = control, :
convergence code 4 from Nelder_Mead: failure to converge in 10000 evaluations
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
Model failed to converge with max|grad| = 0.256533 (tol = 0.002, component 1)
See ?lme4::convergence and ?lme4::troubleshooting.
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
Model is nearly unidentifiable: very large eigenvalue
- Rescale variables?;Model is nearly unidentifiable: large eigenvalue ratio
- Rescale variables?
Correlation matrix not shown by default, as p = 16 > 12.
Use print(res$value, correlation=TRUE) or
vcov(res$value) if you need it
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
Model failed to converge with max|grad| = 0.132723 (tol = 0.002, component 1)
See ?lme4::convergence and ?lme4::troubleshooting.
boundary (singular) fit: see help('isSingular')
Correlation matrix not shown by default, as p = 16 > 12.
Use print(res$value, correlation=TRUE) or
vcov(res$value) if you need it
Numeric predictors rescaled!!!
The default multilevel model is singular since the between-Day variance for the intercept and the between-SUR.ID variance for the intercepts are zero.
Then, we consider the next model after removing these random effects.
Correlation matrix not shown by default, as p = 16 > 12.
Use print(res$value, correlation=TRUE) or
vcov(res$value) if you need it
boundary (singular) fit: see help('isSingular')
The default multilevel model is singular since the between-Subject variance for the nsexage slope is zero.
Then, we consider the next model after removing this random effect.
boundary (singular) fit: see help('isSingular')
The default multilevel model is singular since all the random-effects variances are zero.
Then, we consider the next model after removing the random effects.
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
Model is nearly unidentifiable: very large eigenvalue
- Rescale variables?
Numeric predictors rescaled!!!
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
Model failed to converge with max|grad| = 0.00276086 (tol = 0.002, component 1)
See ?lme4::convergence and ?lme4::troubleshooting.
Loading required namespace: ggplot2
Warning: Some predictor variables are on very different scales: consider rescaling.
You may also use (g)lmerControl(autoscale = TRUE) to improve numerical stability.
Error: processing vignette 'introduction.Rnw' failed with diagnostics:
chunk 11
Error in dwmw(fit_1, scale = TRUE, verbose = TRUE) :
Too many iterations!! to get the model carat ~ depth + table + price + x + y + z + (1 + price | cut) to converge. Check it!!
--- failed re-building ‘introduction.Rnw’
SUMMARY: processing the following file failed:
‘introduction.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [7s/10s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR