* installing *source* package ‘terra’ ...
** this is package ‘terra’ version ‘1.8-54’
** package ‘terra’ successfully unpacked and MD5 sums checked
** using staged installation
configure: CC: clang-20 -std=gnu23
configure: CXX: clang++-20 -std=gnu++17
checking for gdal-config... /usr/local/clang/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.10.3
checking GDAL version >= 2.0.1... yes
checking for gcc... clang-20 -std=gnu23
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang-20 -std=gnu23 accepts -g... yes
checking for clang-20 -std=gnu23 option to enable C11 features... -std=gnu11
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... yes
checking GDAL: /usr/local/clang/share/gdal/pcs.csv readable... no
checking GDAL: checking whether PROJ is available for linking:... yes
checking GDAL: checking whether PROJ is available for running:... yes
configure: GDAL: 3.10.3
configure: pkg-config proj exists, will use it
configure: using proj.h.
configure: PROJ: 9.6.2
checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes
checking for geos-config... /usr/bin/geos-config
checking geos-config usability... yes
configure: GEOS: 3.13.0
checking GEOS version >= 3.4.0... yes
checking for geos_c.h... yes
checking geos: linking with -L/usr/lib64 -lgeos_c... yes
checking Intel TBB exists:... yes
checking tbb available for compiling and linking:... yes
configure: Package CPP flags: -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB
configure: Package LIBS: -ltbb -lproj -L/usr/local/clang/lib64 -lgdal -L/usr/lib64 -lgeos_c
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘clang version 20.1.7’
using C++ compiler: ‘clang version 20.1.7’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/terra/src'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppFunctions.cpp -o RcppFunctions.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppModule.cpp -o RcppModule.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c arith.cpp -o arith.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c crs.cpp -o crs.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c distRaster.cpp -o distRaster.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c distValueRaster.cpp -o distValueRaster.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c distVector.cpp -o distVector.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c distance.cpp -o distance.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c extract.cpp -o extract.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c file_utils.cpp -o file_utils.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c focal.cpp -o focal.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gcp.cpp -o gcp.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdal_algs.cpp -o gdal_algs.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdal_multidimensional.cpp -o gdal_multidimensional.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdalio.cpp -o gdalio.o
clang-20 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c geodesic.c -o geodesic.o
gdalio.cpp:932:23: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709550514 to 18446744073709549568 [-Wimplicit-const-int-float-conversion]
932 | naflag = UINT64_MAX-1101;
| ~ ~~~~~~~~~~^~~~~
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c geos_methods.cpp -o geos_methods.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c geosphere.cpp -o geosphere.o
1 warning generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c math_utils.cpp -o math_utils.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mediancut.cpp -o mediancut.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c memory.cpp -o memory.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c movingWindow.cpp -o movingWindow.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ncdf.cpp -o ncdf.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c nearest.cpp -o nearest.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c patches.cpp -o patches.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ram.cpp -o ram.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c raster_methods.cpp -o raster_methods.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c raster_stats.cpp -o raster_stats.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c rasterize.cpp -o rasterize.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c read.cpp -o read.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c read_gdal.cpp -o read_gdal.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c read_ogr.cpp -o read_ogr.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sample.cpp -o sample.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sort.cpp -o sort.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c spatBase.cpp -o spatBase.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c spatDataframe.cpp -o spatDataframe.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c spatFactor.cpp -o spatFactor.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c spatRaster.cpp -o spatRaster.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c spatRasterMultiple.cpp -o spatRasterMultiple.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c spatSources.cpp -o spatSources.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c spatTime.cpp -o spatTime.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c spatVector.cpp -o spatVector.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c spatVector2.cpp -o spatVector2.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c string_utils.cpp -o string_utils.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c surfArea.cpp -o surfArea.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c table_utils.cpp -o table_utils.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c vecmath.cpp -o vecmath.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c vecmathse.cpp -o vecmathse.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c vector_methods.cpp -o vector_methods.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c watershed_internal.cpp -o watershed_internal.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c write.cpp -o write.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c write_gdal.cpp -o write_gdal.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -DHAVE_TBB -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c write_ogr.cpp -o write_ogr.o
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o terra.so RcppExports.o RcppFunctions.o RcppModule.o arith.o crs.o distRaster.o distValueRaster.o distVector.o distance.o extract.o file_utils.o focal.o gcp.o gdal_algs.o gdal_multidimensional.o gdalio.o geodesic.o geos_methods.o geosphere.o math_utils.o mediancut.o memory.o movingWindow.o ncdf.o nearest.o patches.o ram.o raster_methods.o raster_stats.o rasterize.o read.o read_gdal.o read_ogr.o sample.o sort.o spatBase.o spatDataframe.o spatFactor.o spatRaster.o spatRasterMultiple.o spatSources.o spatTime.o spatVector.o spatVector2.o string_utils.o surfArea.o table_utils.o vecmath.o vecmathse.o vector_methods.o watershed_internal.o write.o write_gdal.o write_ogr.o -ltbb -lproj -L/usr/local/clang/lib64 -lgdal -L/usr/lib64 -lgeos_c
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/terra/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/terra/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/terra/src'
installing to /data/gannet/ripley/R/packages/tests-clang/terra.Rcheck/00LOCK-terra/00new/terra/libs
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘sds’ with signature ‘x="stars"’: no definition for class “stars”
in method for ‘sds’ with signature ‘x="stars_proxy"’: no definition for class “stars_proxy”
in method for ‘svc’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘coerce’ with signature ‘"stars","SpatRasterDataset"’: no definition for class “stars”
in method for ‘coerce’ with signature ‘"ggmap","SpatRaster"’: no definition for class “ggmap”
in method for ‘coerce’ with signature ‘"sf","SpatRaster"’: no definition for class “sf”
in method for ‘coerce’ with signature ‘"sf","SpatVector"’: no definition for class “sf”
in method for ‘coerce’ with signature ‘"sfc","SpatVector"’: no definition for class “sfc”
in method for ‘coerce’ with signature ‘"sfg","SpatVector"’: no definition for class “sfg”
in method for ‘coerce’ with signature ‘"XY","SpatVector"’: no definition for class “XY”
in method for ‘coerce’ with signature ‘"im","SpatRaster"’: no definition for class “im”
in method for ‘coerce’ with signature ‘"SpatVector","Spatial"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"Spatial","SpatVector"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"SpatialGrid","SpatRaster"’: no definition for class “SpatialGrid”
in method for ‘coerce’ with signature ‘"SpatialPixels","SpatRaster"’: no definition for class “SpatialPixels”
in method for ‘crs’ with signature ‘"sf"’: no definition for class “sf”
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘terra’
in method for ‘distance’ with signature ‘x="SpatRaster",y="sf"’: no definition for class “sf”
in method for ‘ext’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘ext’ with signature ‘x="bbox"’: no definition for class “bbox”
in method for ‘ext’ with signature ‘x="Extent"’: no definition for class “Extent”
in method for ‘ext’ with signature ‘x="Raster"’: no definition for class “Raster”
in method for ‘ext’ with signature ‘x="Spatial"’: no definition for class “Spatial”
in method for ‘extract’ with signature ‘x="SpatRaster",y="sf"’: no definition for class “sf”
in method for ‘mask’ with signature ‘x="SpatRaster",mask="sf"’: no definition for class “sf”
in method for ‘points’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘lines’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘polys’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘polys’ with signature ‘x="leaflet"’: no definition for class “leaflet”
in method for ‘lines’ with signature ‘x="leaflet"’: no definition for class “leaflet”
in method for ‘points’ with signature ‘x="leaflet"’: no definition for class “leaflet”
in method for ‘rast’ with signature ‘x="stars"’: no definition for class “stars”
in method for ‘rast’ with signature ‘x="stars_proxy"’: no definition for class “stars_proxy”
in method for ‘rasterize’ with signature ‘x="sf",y="SpatRaster"’: no definition for class “sf”
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘terra’
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘terra’
Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘terra’
Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘terra’
in method for ‘show’ with signature ‘"Rcpp_SpatDataFrame"’: no definition for class “Rcpp_SpatDataFrame”
in method for ‘show’ with signature ‘"Rcpp_SpatCategories"’: no definition for class “Rcpp_SpatCategories”
in method for ‘geomtype’ with signature ‘x="Spatial"’: no definition for class “Spatial”
Creating a generic function for ‘identical’ from package ‘base’ in package ‘terra’
in method for ‘vect’ with signature ‘x="Spatial"’: no definition for class “Spatial”
in method for ‘vect’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘vect’ with signature ‘x="sfc"’: no definition for class “sfc”
in method for ‘vect’ with signature ‘x="XY"’: no definition for class “XY”
Creating a generic function for ‘unserialize’ from package ‘base’ in package ‘terra’
Creating a generic function for ‘readRDS’ from package ‘base’ in package ‘terra’
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (terra)