* installing *source* package ‘svd’ ...
** package ‘svd’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/svd/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c extmat.c -o extmat.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c svd_init.c -o svd_init.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c propack/dlansvd_irl.f -o propack/dlansvd_irl.o
./propack/dlansvd_irl.f:1245:2: warning: Compiler directive was ignored
CDIR$ LOOP COUNT(10000)
^^^^^^^^^^^^^^^^^^^^^^
./propack/dlansvd_irl.f:1253:2: warning: Compiler directive was ignored
CDIR$ IVDEP
^^^^^^^^^^
./propack/dlansvd_irl.f:1254:2: warning: Compiler directive was ignored
CDIR$ LOOP COUNT(10000)
^^^^^^^^^^^^^^^^^^^^^^
./propack/dlansvd_irl.f:1262:2: warning: Compiler directive was ignored
CDIR$ LOOP COUNT(10000)
^^^^^^^^^^^^^^^^^^^^^^
./propack/dlansvd_irl.f:1655:10: warning: Reference to the procedure 'dgemm' has an implicit interface that is distinct from another reference: incompatible dummy argument #7: incompatible dummy data object shapes
call dgemm('n',transb,blocksize,n,k,alpha,A(i,1),lda,
^
./propack/dlansvd_irl.f:1603:10: previous reference to 'dgemm'
call dgemm(transa,'N',m,blocksize,k,alpha,A,lda,
^
./propack/dlansvd_irl.f:1663:7: warning: Reference to the procedure 'dgemm' has an implicit interface that is distinct from another reference: incompatible dummy argument #7: incompatible dummy data object shapes
call dgemm('n',transb,m-i+1,n,k,alpha,A(i,1),lda,
^
./propack/dlansvd_irl.f:1603:10: previous reference to 'dgemm'
call dgemm(transa,'N',m,blocksize,k,alpha,A,lda,
^
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c propack/printstat.f90 -o propack/printstat.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c propack/propack_svd.c -o propack/propack_svd.o
propack/propack_svd.c:61:7: warning: unused variable 'i' [-Wunused-variable]
61 | int i;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/dsort2.c -o trlan/dsort2.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/dstqrb.c -o trlan/dstqrb.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/trlcore.c -o trlan/trlcore.o
trlan/trlcore.c:246:5: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | count;
| ^
trlan/trlcore.c:972:22: warning: variable 'north' set but not used [-Wunused-but-set-variable]
972 | int i, j, k, nran, north;
| ^
trlan/trlcore.c:1095:28: warning: variable 'no' set but not used [-Wunused-but-set-variable]
1095 | int i, usecgs, jnd, jm1, no, nr;
| ^
trlan/trlcore.c:1095:32: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
1095 | int i, usecgs, jnd, jm1, no, nr;
| ^
4 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/trlaux.c -o trlan/trlaux.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/trlan.c -o trlan/trlan.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/trl_comm_none.c -o trlan/trl_comm_none.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/trlmap.c -o trlan/trlmap.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/restart.c -o trlan/restart.o
trlan/restart.c:346:32: warning: variable 'mn1' set but not used [-Wunused-but-set-variable]
346 | int i, j, k, nd, l1, l2, mn, mn1, mn2, t, k1, k2,
| ^
trlan/restart.c:348:62: warning: variable 'min_ratio' set but not used [-Wunused-but-set-variable]
348 | double gamma0, gamma, val, min_val, min_gamma, min_gamma0, min_ratio,
| ^
trlan/restart.c:533:28: warning: variable 'min_l' set but not used [-Wunused-but-set-variable]
533 | min_k1, min_k2, min_m, min_l;
| ^
trlan/restart.c:534:39: warning: variable 'min_gamma' set but not used [-Wunused-but-set-variable]
534 | double gamma0, gamma, val, min_val, min_gamma, min_gamma0, min_ratio,
| ^
trlan/restart.c:534:50: warning: variable 'min_gamma0' set but not used [-Wunused-but-set-variable]
534 | double gamma0, gamma, val, min_val, min_gamma, min_gamma0, min_ratio,
| ^
trlan/restart.c:534:62: warning: variable 'min_ratio' set but not used [-Wunused-but-set-variable]
534 | double gamma0, gamma, val, min_val, min_gamma, min_gamma0, min_ratio,
| ^
6 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/ztrl_comm_none.c -o trlan/ztrl_comm_none.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/ztrlan.c -o trlan/ztrlan.o
trlan/ztrlan.c:283:9: warning: unused variable 'fp' [-Wunused-variable]
283 | FILE *fp;
| ^~
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/ztrlcore.c -o trlan/ztrlcore.o
trlan/ztrlcore.c:565:8: warning: variable 'count' set but not used [-Wunused-but-set-variable]
565 | ldrr, count;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/ztrlaux.c -o trlan/ztrlaux.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/zdaxpy.c -o trlan/zdaxpy.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/zdgemv.c -o trlan/zdgemv.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/trlan_R.c -o trlan/trlan_R.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include -DUSE_FC_LEN_T -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c trlan/ztrlan_R.c -o trlan/ztrlan_R.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o svd.so extmat.o svd_init.o propack/dlansvd_irl.o propack/printstat.o propack/propack_svd.o trlan/dsort2.o trlan/dstqrb.o trlan/trlcore.o trlan/trlaux.o trlan/trlan.o trlan/trl_comm_none.o trlan/trlmap.o trlan/restart.o trlan/ztrl_comm_none.o trlan/ztrlan.o trlan/ztrlcore.o trlan/ztrlaux.o trlan/zdaxpy.o trlan/zdgemv.o trlan/trlan_R.o trlan/ztrlan_R.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/svd/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/svd/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/svd/src'
installing to /data/gannet/ripley/R/packages/tests-clang/svd.Rcheck/00LOCK-svd/00new/svd/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (svd)