* installing *source* package ‘stpphawkes’ ... ** package ‘stpphawkes’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 19.1.3’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/stpphawkes/src' /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c areapl.cpp -o areapl.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c condInt_mcmc_stpp.cpp -o condInt_mcmc_stpp.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c condInt_mcmc_stpp_branching.cpp -o condInt_mcmc_stpp_branching.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c condInt_mcmc_stpp_branching_md.cpp -o condInt_mcmc_stpp_branching_md.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c condInt_mcmc_stpp_branching_nonunif.cpp -o condInt_mcmc_stpp_branching_nonunif.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c condInt_mcmc_stpp_branching_nonunif_md.cpp -o condInt_mcmc_stpp_branching_nonunif_md.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c condInt_mcmc_temporal.cpp -o condInt_mcmc_temporal.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c condInt_mcmc_temporal_branching.cpp -o condInt_mcmc_temporal_branching.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c condInt_mcmc_temporal_branching_md.cpp -o condInt_mcmc_temporal_branching_md.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c condInt_mcmc_temporal_md.cpp -o condInt_mcmc_temporal_md.o condInt_mcmc_temporal_md.cpp:202:18: warning: variable 'z_accept' set but not used [-Wunused-but-set-variable] 202 | unsigned int z_accept = 0; | ^ 1 warning generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c helper_functions.cpp -o helper_functions.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c homo_ppp.cpp -o homo_ppp.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c model_likelihood.cpp -o model_likelihood.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c nonunif_ppp.cpp -o nonunif_ppp.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c polygon.cpp -o polygon.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c ptinpoly.cpp -o ptinpoly.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c simulate_stpp_hawkes.cpp -o simulate_stpp_hawkes.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c simulate_stpp_hawkes_nonunif.cpp -o simulate_stpp_hawkes_nonunif.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c simulate_temporal_hawkes.cpp -o simulate_temporal_hawkes.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c spatio_temporal_common.cpp -o spatio_temporal_common.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c spatio_temporal_common_nonunif.cpp -o spatio_temporal_common_nonunif.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c temporal_catmark.cpp -o temporal_catmark.o spatio_temporal_common_nonunif.cpp:16:10: warning: unused variable 'epsilon' [-Wunused-variable] 16 | double epsilon = t_max - 36.0 / b_curr; | ^~~~~~~ spatio_temporal_common_nonunif.cpp:100:10: warning: unused variable 'epsilon' [-Wunused-variable] 100 | double epsilon = 36.0 / b_curr; | ^~~~~~~ spatio_temporal_common_nonunif.cpp:152:10: warning: unused variable 'epsilon' [-Wunused-variable] 152 | double epsilon = t_max - 38 / b; | ^~~~~~~ spatio_temporal_common_nonunif.cpp:235:11: warning: unused variable 'epsilon' [-Wunused-variable] 235 | double epsilon = 36.0 / b; | ^~~~~~~ spatio_temporal_common.cpp:16:12: warning: unused variable 'epsilon' [-Wunused-variable] 16 | double epsilon = t_max - 36.0 / b_curr; | ^~~~~~~ spatio_temporal_common.cpp:67:12: warning: unused variable 'epsilon' [-Wunused-variable] 67 | double epsilon = 36.0 / b_curr; | ^~~~~~~ spatio_temporal_common.cpp:112:12: warning: unused variable 'epsilon' [-Wunused-variable] 112 | double epsilon = t_max - 38 / b; | ^~~~~~~ spatio_temporal_common.cpp:205:12: warning: unused variable 'epsilon' [-Wunused-variable] 205 | double epsilon = 36.0 / b; | ^~~~~~~ /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c temporal_catmark_common.cpp -o temporal_catmark_common.o 4 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c temporal_catmark_md.cpp -o temporal_catmark_md.o 4 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c temporal_common.cpp -o temporal_common.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c temporal_contmark.cpp -o temporal_contmark.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c temporal_contmark_common.cpp -o temporal_contmark_common.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppGSL/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp `/data/gannet/ripley/R/R-clang/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c utilities.cpp -o utilities.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o stpphawkes.so RcppExports.o areapl.o condInt_mcmc_stpp.o condInt_mcmc_stpp_branching.o condInt_mcmc_stpp_branching_md.o condInt_mcmc_stpp_branching_nonunif.o condInt_mcmc_stpp_branching_nonunif_md.o condInt_mcmc_temporal.o condInt_mcmc_temporal_branching.o condInt_mcmc_temporal_branching_md.o condInt_mcmc_temporal_md.o helper_functions.o homo_ppp.o model_likelihood.o nonunif_ppp.o polygon.o ptinpoly.o simulate_stpp_hawkes.o simulate_stpp_hawkes_nonunif.o simulate_temporal_hawkes.o spatio_temporal_common.o spatio_temporal_common_nonunif.o temporal_catmark.o temporal_catmark_common.o temporal_catmark_md.o temporal_common.o temporal_contmark.o temporal_contmark_common.o utilities.o -lgsl -lgslcblas -lm -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/stpphawkes/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/stpphawkes/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/stpphawkes/src' installing to /data/gannet/ripley/R/packages/tests-clang/stpphawkes.Rcheck/00LOCK-stpphawkes/00new/stpphawkes/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stpphawkes)