* installing *source* package ‘stelfi’ ...
** this is package ‘stelfi’ version ‘1.0.2’
** package ‘stelfi’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.1’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/stelfi/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/TMB/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c stelfi.cpp -o stelfi.o
In file included from stelfi.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stelfi.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stelfi.cpp:14:
./spatial_hawkes.h:276:12: warning: unused variable 'gamma_ratio' [-Wunused-variable]
  276 |       Type gamma_ratio = (sum(lambdaXsasep) + D) / gammac;
      |            ^~~~~~~~~~~
stelfi.cpp:44:12: note: in instantiation of function template specialization 'spatial_hawkes<TMBad::global::ad_aug>' requested here
   44 |     return spatial_hawkes(this);
      |            ^
/data/gannet/ripley/R/test-clang/TMB/include/tmb_core.hpp:1281:6: note: in instantiation of member function 'objective_function<TMBad::global::ad_aug>::operator()' requested here
 1281 |     F(); // Run through user template (modifies reportvector)
      |      ^
In file included from stelfi.cpp:14:
./spatial_hawkes.h:291:16: warning: unused variable 'before' [-Wunused-variable]
  291 |           Type before = gammac;
      |                ^~~~~~
./spatial_hawkes.h:321:22: warning: unused variable 'before' [-Wunused-variable]
  321 |                 Type before = gammac;
      |                      ^~~~~~
./spatial_hawkes.h:276:12: warning: unused variable 'gamma_ratio' [-Wunused-variable]
  276 |       Type gamma_ratio = (sum(lambdaXsasep) + D) / gammac;
      |            ^~~~~~~~~~~
stelfi.cpp:44:12: note: in instantiation of function template specialization 'spatial_hawkes<double>' requested here
   44 |     return spatial_hawkes(this);
      |            ^
/data/gannet/ripley/R/test-clang/TMB/include/tmb_core.hpp:2035:34: note: in instantiation of member function 'objective_function<double>::operator()' requested here
 2035 |       PROTECT( res = asSEXP( pf->operator()() ) );
      |                                  ^
/data/gannet/ripley/R/R-clang/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
In file included from stelfi.cpp:14:
./spatial_hawkes.h:291:16: warning: unused variable 'before' [-Wunused-variable]
  291 |           Type before = gammac;
      |                ^~~~~~
./spatial_hawkes.h:321:22: warning: unused variable 'before' [-Wunused-variable]
  321 |                 Type before = gammac;
      |                      ^~~~~~
9 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o stelfi.so stelfi.o -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/stelfi/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/stelfi/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/stelfi/src'
installing to /data/gannet/ripley/R/packages/tests-clang/stelfi.Rcheck/00LOCK-stelfi/00new/stelfi/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stelfi)