* installing *source* package ‘stan4bart’ ...
** this is package ‘stan4bart’ version ‘0.0-13’
** package ‘stan4bart’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /usr/local/clang23/bin/clang++ -std=gnu++20 accepts -g... yes
checking for /usr/local/clang23/bin/clang++ -std=gnu++20 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... /usr/local/clang23/bin/clang++ -std=gnu++20 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether /usr/local/clang23/bin/clang++ -std=gnu++20 accepts -g... (cached) yes
checking for /usr/local/clang23/bin/clang++ -std=gnu++20 option to enable C++11 features... (cached) none needed
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for gcc... /usr/local/clang23/bin/clang-23 -std=gnu23
checking whether the compiler supports GNU C... yes
checking whether /usr/local/clang23/bin/clang-23 -std=gnu23 accepts -g... yes
checking for /usr/local/clang23/bin/clang-23 -std=gnu23 option to enable C11 features... -std=gnu11
checking for x86 cpuid output... unknown
checking for x86-AVX xgetbv output... unknown
checking for x86 cpuid 0x00000000 output... 14:756e6547:6c65746e:49656e69
checking for x86 cpuid 0x00000001 output... 406f1:c200800:7ffefbff:bfebfbff
checking whether SSE2 is supported by the processor... yes
checking whether SSE2 is supported by the processor and OS... yes
checking whether C++ compiler accepts -msse2... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for malloc.h... yes
checking size of size_t... 8
checking alignment of void*... 8
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for working posix_memalign... yes
checking for ffs... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
specified C++17
using C compiler: ‘clang version 23.1.0’
using C++ compiler: ‘clang version 23.1.0’
using C++17
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/stan4bart/src'
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dbarts/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c bart_util.cpp -o bart_util.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dbarts/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c init.cpp -o init.o
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:68:
In file included from include/stan/callbacks/stream_writer.hpp:4:
In file included from include/stan/callbacks/writer.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:164:69: note: expanded from here
164 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:166:8: note: expanded from here
166 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:68:
In file included from include/stan/callbacks/stream_writer.hpp:4:
In file included from include/stan/callbacks/writer.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:164:110: note: expanded from here
164 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:166:8: note: expanded from here
166 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:68:
In file included from include/stan/callbacks/stream_writer.hpp:4:
In file included from include/stan/callbacks/writer.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:164:136: note: expanded from here
164 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:166:8: note: expanded from here
166 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dbarts/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c misc_adaptiveRadixTree.c -o misc_adaptiveRadixTree.o
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dbarts/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c misc_string.c -o misc_string.o
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dbarts/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rc_bounds.c -o rc_bounds.o
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dbarts/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rc_util.c -o rc_util.o
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
| ^~~~~~~~~~~~~~~~~~~
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template]
18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template]
270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template]
20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template]
35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n)
| ^~~~~~~~~
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template]
501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */
| ^~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template]
717 | static void init_scoring
| ^~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template]
954 | static IndexType find_ordering /* return the number of garbage collections */
| ^~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template]
1566 | static void detect_super_cols
| ^~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template]
1717 | static IndexType garbage_collection /* returns the new value of pfree */
| ^~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template]
342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats])
| ^~~~~~~~~~~~~~~~
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/task_arena.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_arena.h:27:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
89 | static void suspend_callback(void* user_callback, suspend_point sp) {
| ^~~~~~~~~~~~~~~~
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:15:
In file included from include/stan/math/prim/functor.hpp:14:
In file included from include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:45:3: warning: unused function template 'boost_numeric_ublas_sqrt' [-Wunused-template]
45 | boost_numeric_ublas_sqrt (const T& t) {
| ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from init.cpp:30:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:15:
In file included from include/stan/math/prim/functor.hpp:27:
In file included from include/stan/math/prim/functor/reduce_sum.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_reduce.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_reduce.h:27:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
130 | d1::task* task_ptr_or_nullptr(F&& f){
| ^~~~~~~~~~~~~~~~~~~
18 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -I'/data/localhost/ripley/R/test-clang/dbarts/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/data/localhost/ripley/R/test-clang/RcppParallel/include -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c stan_sampler.cpp -o stan_sampler.o
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:68:
In file included from include/stan/callbacks/stream_writer.hpp:4:
In file included from include/stan/callbacks/writer.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:214:69: note: expanded from here
214 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:216:8: note: expanded from here
216 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:68:
In file included from include/stan/callbacks/stream_writer.hpp:4:
In file included from include/stan/callbacks/writer.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:214:110: note: expanded from here
214 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:216:8: note: expanded from here
216 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:68:
In file included from include/stan/callbacks/stream_writer.hpp:4:
In file included from include/stan/callbacks/writer.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:214:136: note: expanded from here
214 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:216:8: note: expanded from here
216 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template]
240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
| ^~~~~~~~~~~~~~~~~~~~~
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template]
839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n)
| ^~~~~~~~~~~~~~~~~~~
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template]
18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template]
270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template]
20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template]
35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n)
| ^~~~~~~~~
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:4:
In file included from include/stan/math/prim/err/invalid_argument.hpp:4:
In file included from include/stan/math/prim/meta.hpp:72:
In file included from include/stan/math/prim/meta/append_return_type.hpp:4:
In file included from include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template]
501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */
| ^~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template]
717 | static void init_scoring
| ^~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template]
954 | static IndexType find_ordering /* return the number of garbage collections */
| ^~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template]
1566 | static void detect_super_cols
| ^~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template]
1717 | static IndexType garbage_collection /* returns the new value of pfree */
| ^~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template]
342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats])
| ^~~~~~~~~~~~~~~~
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:10:
In file included from include/stan/math/prim/core.hpp:4:
In file included from include/stan/math/prim/core/init_threadpool_tbb.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/task_arena.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_arena.h:27:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template]
89 | static void suspend_callback(void* user_callback, suspend_point sp) {
| ^~~~~~~~~~~~~~~~
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:15:
In file included from include/stan/math/prim/functor.hpp:14:
In file included from include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
/data/localhost/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:45:3: warning: unused function template 'boost_numeric_ublas_sqrt' [-Wunused-template]
45 | boost_numeric_ublas_sqrt (const T& t) {
| ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:15:
In file included from ./stan_sampler_includes.hpp:78:
In file included from include/stan/io/dump.hpp:7:
In file included from include/stan/math/prim.hpp:15:
In file included from include/stan/math/prim/functor.hpp:27:
In file included from include/stan/math/prim/functor/reduce_sum.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/parallel_reduce.h:17:
In file included from /data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/parallel_reduce.h:27:
/data/localhost/ripley/R/test-clang/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template]
130 | d1::task* task_ptr_or_nullptr(F&& f){
| ^~~~~~~~~~~~~~~~~~~
18 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o stan4bart.so bart_util.o init.o misc_adaptiveRadixTree.o misc_string.o rc_bounds.o rc_util.o stan_sampler.o -L/data/localhost/ripley/R/test-clang/RcppParallel/lib/ -Wl,-rpath,/data/localhost/ripley/R/test-clang/RcppParallel/lib/ -ltbb -ltbbmalloc
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/stan4bart/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/stan4bart/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/stan4bart/src'
installing to /data/localhost/ripley/R/packages/tests-clang/stan4bart.Rcheck/00LOCK-stan4bart/00new/stan4bart/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stan4bart)