* installing *source* package ‘srm’ ...
** package ‘srm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/srm/src'
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c SRM_RCPP_SIGMA_Y_INV_WOODBURY.cpp -o SRM_RCPP_SIGMA_Y_INV_WOODBURY.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c SRM_RCPP_SRM_ARBSRM.cpp -o SRM_RCPP_SRM_ARBSRM.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c SRM_RCPP_SRM_COMPUTE_HESSIAN_RR.cpp -o SRM_RCPP_SRM_COMPUTE_HESSIAN_RR.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c SRM_RCPP_SRM_COMPUTE_LOG_LIKELIHOOD_GRADIENT.cpp -o SRM_RCPP_SRM_COMPUTE_LOG_LIKELIHOOD_GRADIENT.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c SRM_RCPP_SRM_COMPUTE_NONZERO_GRADIENT.cpp -o SRM_RCPP_SRM_COMPUTE_NONZERO_GRADIENT.o
SRM_RCPP_SRM_ARBSRM.cpp:83:18: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
            if ( ( x(ii,hh)!=0 ) | (y(ii,hh)!= 0 ) ){
                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                 ||
SRM_RCPP_SRM_ARBSRM.cpp:83:18: note: cast one or both operands to int to silence this warning
SRM_RCPP_SRM_ARBSRM.cpp:90:18: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
            if ( ( x(hh,ii)!=0 ) | (y(hh,ii)!= 0 ) ){
                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                 ||
SRM_RCPP_SRM_ARBSRM.cpp:90:18: note: cast one or both operands to int to silence this warning
SRM_RCPP_SRM_ARBSRM.cpp:189:17: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
            if ((inde(i,0)!=inde(j,0)) | (inde(i,1)!=inde(j,1))) {
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                       ||
SRM_RCPP_SRM_ARBSRM.cpp:189:17: note: cast one or both operands to int to silence this warning
SRM_RCPP_SRM_ARBSRM.cpp:190:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
                if ((inde(i,0)==inde(j,1)) & (inde(i,1)==inde(j,0))){
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                           &&
SRM_RCPP_SRM_ARBSRM.cpp:190:21: note: cast one or both operands to int to silence this warning
SRM_RCPP_SRM_ARBSRM.cpp:230:17: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
            if ((recip(inde(i,0),inde(i,1))!=0) & (recip(inde(j,0),inde(j,1))!=0)){
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                                &&
SRM_RCPP_SRM_ARBSRM.cpp:230:17: note: cast one or both operands to int to silence this warning
SRM_RCPP_SRM_ARBSRM.cpp:231:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
                if ((inde(i,0)==inde(j,1)) & (inde(i,1)==inde(j,0))){
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                           &&
SRM_RCPP_SRM_ARBSRM.cpp:231:21: note: cast one or both operands to int to silence this warning
SRM_RCPP_SRM_ARBSRM.cpp:235:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
                if ((inde(i,0)!=inde(j,1)) & (inde(i,1)==inde(j,0))){
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                           &&
SRM_RCPP_SRM_ARBSRM.cpp:235:21: note: cast one or both operands to int to silence this warning
SRM_RCPP_SRM_ARBSRM.cpp:238:21: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
                if ((inde(i,0)==inde(j,1)) & (inde(i,1)!=inde(j,0))){
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                           &&
SRM_RCPP_SRM_ARBSRM.cpp:238:21: note: cast one or both operands to int to silence this warning
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c SRM_RCPP_SRM_DATA_LIST_INSERTION_MATRIX.cpp -o SRM_RCPP_SRM_DATA_LIST_INSERTION_MATRIX.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c SRM_RCPP_SRM_MAKE_DATA_LIST.cpp -o SRM_RCPP_SRM_MAKE_DATA_LIST.o
clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang/include    -fpic  -g -O3 -Wall -pedantic -frtti  -c SRM_RCPP_SRM_ULS_GRADIENT.cpp -o SRM_RCPP_SRM_ULS_GRADIENT.o
8 warnings generated.
clang++ -std=gnu++14 -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o srm.so RcppExports.o SRM_RCPP_SIGMA_Y_INV_WOODBURY.o SRM_RCPP_SRM_ARBSRM.o SRM_RCPP_SRM_COMPUTE_HESSIAN_RR.o SRM_RCPP_SRM_COMPUTE_LOG_LIKELIHOOD_GRADIENT.o SRM_RCPP_SRM_COMPUTE_NONZERO_GRADIENT.o SRM_RCPP_SRM_DATA_LIST_INSERTION_MATRIX.o SRM_RCPP_SRM_MAKE_DATA_LIST.o SRM_RCPP_SRM_ULS_GRADIENT.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/srm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/srm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/srm/src'
installing to /data/gannet/ripley/R/packages/tests-clang/srm.Rcheck/00LOCK-srm/00new/srm/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (srm)