• using R Under development (unstable) (2026-07-13 r90246)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)     flang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-07-16 02:12:16 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘smaa/DESCRIPTION’ ... OK
• this is package ‘smaa’ version ‘0.3-3’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘smaa’ can be installed ... OK See the install log for details.
• used C compiler: ‘clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)’
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking for differences from example reference output ... NOTE Comparing ‘smaa-Ex.Rout’ to ‘smaa-Ex.Rout.save’: 18,19d17 < Warning in structure(c(0.267656955387735, 0.507271138298418, 0.540984123067985, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 21,22d18 < Warning in structure(c(0.269619548693299, 0.0396115675102919, 0.0212409954983741, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 86,87d81 < Warning in structure(c(0.267656955387735, 0.507271138298418, 0.540984123067985, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 91,92d84 < Warning in structure(c(0.269619548693299, 0.0396115675102919, 0.0212409954983741, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 139,140d130 < Warning in structure(c(0.267656955387735, 0.507271138298418, 0.540984123067985, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 142,143d131 < Warning in structure(c(0.269619548693299, 0.0396115675102919, 0.0212409954983741, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 179,180d166 < Warning in structure(c(0.267656955387735, 0.507271138298418, 0.540984123067985, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 182,183d167 < Warning in structure(c(0.269619548693299, 0.0396115675102919, 0.0212409954983741, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 212,213d195 < Warning in structure(c(0.267656955387735, 0.507271138298418, 0.540984123067985, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 215,216d196 < Warning in structure(c(0.269619548693299, 0.0396115675102919, 0.0212409954983741, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 270,271d249 < Warning in structure(c(0.267656955387735, 0.507271138298418, 0.540984123067985, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 273,274d250 < Warning in structure(c(0.269619548693299, 0.0396115675102919, 0.0212409954983741, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 301,302d276 < Warning in structure(c(0.267656955387735, 0.507271138298418, 0.540984123067985, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 304,305d277 < Warning in structure(c(0.269619548693299, 0.0396115675102919, 0.0212409954983741, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 334,335d305 < Warning in structure(c(0.267656955387735, 0.507271138298418, 0.540984123067985, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 337,338d306 < Warning in structure(c(0.269619548693299, 0.0396115675102919, 0.0212409954983741, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 350,351d317 < Warning in structure(c(2, 1, 2, 1, 1, 2, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 370,371d335 < Warning in structure(c(0.267656955387735, 0.507271138298418, 0.540984123067985, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 375,376d338 < Warning in structure(c(0.269619548693299, 0.0396115675102919, 0.0212409954983741, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead. 394,395d355 < Warning in structure(c(0.531898647556104, 0.637414911723496, 0.700653187184267, : < Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead.
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... OK   Running ‘nacw.R’   Running ‘pvf.R’   Running ‘pwi.R’   Running ‘rankEntropy.R’
• checking PDF version of manual ... [7s/17s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE