* installing *source* package ‘skm’ ...
** this is package ‘skm’ version ‘0.1.5.4’
** package ‘skm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/skm/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c dist_wlatlng.cpp -o dist_wlatlng.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c matrix_minmax.cpp -o matrix_minmax.o
matrix_minmax.cpp:13:7: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
   13 |     u.min(min_val_idx);
      |       ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here
  544 |   [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
      |     ^
matrix_minmax.cpp:17:13: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
   17 |     u(wlmt).min(min_val_idx); min_val_idx = wlmt(min_val_idx);
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Base_bones.hpp:130:5: note: 'min' has been explicitly marked deprecated here
  130 |   [[deprecated("use .index_min() instead")]] inline elem_type min(uword& index_of_min_val) const;
      |     ^
matrix_minmax.cpp:33:7: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
   33 |     u.max(max_val_idx);
      |       ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:5: note: 'max' has been explicitly marked deprecated here
  545 |   [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
      |     ^
matrix_minmax.cpp:37:13: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
   37 |     u(wlmt).max(max_val_idx); max_val_idx = wlmt(max_val_idx);
      |             ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Base_bones.hpp:131:5: note: 'max' has been explicitly marked deprecated here
  131 |   [[deprecated("use .index_max() instead")]] inline elem_type max(uword& index_of_max_val) const;
      |     ^
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c skm.cpp -o skm.o
4 warnings generated.
skm.cpp:396:14: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  396 |   o = o_list.min(optim_at);
      |              ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here
  544 |   [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
      |     ^
skm.cpp:483:14: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  483 |   o = o_list.min(optim_at);
      |              ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here
  544 |   [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
      |     ^
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c skm_gdp.cpp -o skm_gdp.o
2 warnings generated.
skm_gdp.cpp:57:32: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
   57 |       rs = arma::sum(x, 1); rs.min(id);
      |                                ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here
  544 |   [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
      |     ^
1 warning generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o skm.so RcppExports.o dist_wlatlng.o matrix_minmax.o skm.o skm_gdp.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/skm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/skm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/skm/src'
installing to /data/gannet/ripley/R/packages/tests-clang/skm.Rcheck/00LOCK-skm/00new/skm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (skm)