* installing *source* package ‘sirus’ ...
** this is package ‘sirus’ version ‘0.3.3’
** package ‘sirus’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++11
using C++ compiler: ‘clang version 21.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/sirus/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c AAA_check_cpp11.cpp -o AAA_check_cpp11.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Data.cpp -o Data.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c DataChar.cpp -o DataChar.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c DataFloat.cpp -o DataFloat.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c DataSparse.cpp -o DataSparse.o
In file included from DataSparse.cpp:29:
In file included from ./DataSparse.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from DataSparse.cpp:29:
In file included from ./DataSparse.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from DataSparse.cpp:29:
In file included from ./DataSparse.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from DataSparse.cpp:29:
In file included from ./DataSparse.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from DataSparse.cpp:29:
./DataSparse.h:53:12: warning: unused variable 'col_permuted' [-Wunused-variable]
53 | size_t col_permuted = col;
| ^~~~~~~~~~~~
6 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Forest.cpp -o Forest.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ForestClassification.cpp -o ForestClassification.o
ForestClassification.cpp:41:9: error: call to 'make_unique' is ambiguous
41 | make_unique<TreeClassification>(forest_child_nodeIDs[i], forest_split_varIDs[i], forest_split_values[i],
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeClassification, _Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<double> *, std::vector<unsigned int> *>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeClassification, Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<double> *, std::vector<unsigned int> *>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
ForestClassification.cpp:101:9: error: call to 'make_unique' is ambiguous
101 | make_unique<TreeClassification>(&class_values, &response_classIDs, &sampleIDs_per_class, &class_weights));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeClassification, _Args = <std::vector<double> *, std::vector<unsigned int> *, std::vector<std::vector<unsigned long>> *, std::vector<double> *>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeClassification, Args = <std::vector<double> *, std::vector<unsigned int> *, std::vector<std::vector<unsigned long>> *, std::vector<double> *>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
ForestClassification.cpp:318:9: error: call to 'make_unique' is ambiguous
318 | make_unique<TreeClassification>(child_nodeIDs, split_varIDs, split_values, &class_values, &response_classIDs));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeClassification, _Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<double> *, std::vector<unsigned int> *>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeClassification, Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<double> *, std::vector<unsigned int> *>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
3 errors generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:201: ForestClassification.o] Error 1
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ForestProbability.cpp -o ForestProbability.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ForestRegression.cpp -o ForestRegression.o
ForestProbability.cpp:36:9: error: call to 'make_unique' is ambiguous
36 | make_unique<TreeProbability>(forest_child_nodeIDs[i], forest_split_varIDs[i], forest_split_values[i],
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeProbability, _Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<double> *, std::vector<unsigned int> *, std::vector<std::vector<double>> &>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeProbability, Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<double> *, std::vector<unsigned int> *, std::vector<std::vector<double>> &>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
ForestProbability.cpp:106:9: error: call to 'make_unique' is ambiguous
106 | make_unique<TreeProbability>(&class_values, &response_classIDs, &sampleIDs_per_class, &class_weights));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeProbability, _Args = <std::vector<double> *, std::vector<unsigned int> *, std::vector<std::vector<unsigned long>> *, std::vector<double> *>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeProbability, Args = <std::vector<double> *, std::vector<unsigned int> *, std::vector<std::vector<unsigned long>> *, std::vector<double> *>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
ForestProbability.cpp:325:9: error: call to 'make_unique' is ambiguous
325 | make_unique<TreeProbability>(child_nodeIDs, split_varIDs, split_values, &class_values, &response_classIDs,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeProbability, _Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<double> *, std::vector<unsigned int> *, std::vector<std::vector<double>> &>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeProbability, Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<double> *, std::vector<unsigned int> *, std::vector<std::vector<double>> &>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
3 errors generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ForestSurvival.cpp -o ForestSurvival.o
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:201: ForestProbability.o] Error 1
ForestRegression.cpp:36:9: error: call to 'make_unique' is ambiguous
36 | make_unique<TreeRegression>(forest_child_nodeIDs[i], forest_split_varIDs[i], forest_split_values[i]));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeRegression, _Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeRegression, Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
ForestRegression.cpp:239:21: error: call to 'make_unique' is ambiguous
239 | trees.push_back(make_unique<TreeRegression>(child_nodeIDs, split_varIDs, split_values));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeRegression, _Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeRegression, Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
2 errors generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:201: ForestRegression.o] Error 1
ForestSurvival.cpp:40:9: error: call to 'make_unique' is ambiguous
40 | make_unique<TreeSurvival>(forest_child_nodeIDs[i], forest_split_varIDs[i], forest_split_values[i],
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeSurvival, _Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<std::vector<double>> &, std::vector<double> *, std::vector<unsigned long> *>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeSurvival, Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<std::vector<double>> &, std::vector<double> *, std::vector<unsigned long> *>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
ForestSurvival.cpp:108:21: error: call to 'make_unique' is ambiguous
108 | trees.push_back(make_unique<TreeSurvival>(&unique_timepoints, status_varID, &response_timepointIDs));
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeSurvival, _Args = <std::vector<double> *, unsigned long &, std::vector<unsigned long> *>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeSurvival, Args = <std::vector<double> *, unsigned long &, std::vector<unsigned long> *>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
ForestSurvival.cpp:345:9: error: call to 'make_unique' is ambiguous
345 | make_unique<TreeSurvival>(child_nodeIDs, split_varIDs, split_values, chf, &unique_timepoints,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::TreeSurvival, _Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<std::vector<double>> &, std::vector<double> *, std::vector<unsigned long> *>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::TreeSurvival, Args = <std::vector<std::vector<unsigned long>> &, std::vector<unsigned long> &, std::vector<double> &, std::vector<std::vector<double>> &, std::vector<double> *, std::vector<unsigned long> *>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
3 errors generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:201: ForestSurvival.o] Error 1
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c Tree.cpp -o Tree.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c TreeClassification.cpp -o TreeClassification.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c TreeProbability.cpp -o TreeProbability.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c TreeRegression.cpp -o TreeRegression.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c TreeSurvival.cpp -o TreeSurvival.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c rangerCpp.cpp -o rangerCpp.o
rangerCpp.cpp:97:12: error: call to 'make_unique' is ambiguous
97 | data = make_unique<DataRcpp>(input_data, variable_names, num_rows,
| ^~~~~~~~~~~~~~~~~~~~~
/usr/local/clang21/bin/../include/c++/v1/__memory/unique_ptr.h:758:76: note: candidate function [with _Tp = sirus::DataRcpp, _Args = <Rcpp::Matrix<14> &, std::vector<std::string> &, unsigned long &, unsigned long &>, $2 = 0]
758 | inline _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 unique_ptr<_Tp> make_unique(_Args&&... __args) {
| ^
./utility.h:521:48: note: candidate function [with T = sirus::DataRcpp, Args = <Rcpp::Matrix<14> &, std::vector<std::string> &, unsigned long &, unsigned long &>]
521 | typename detail::_Unique_if<T>::_Single_object make_unique(Args&&... args) {
| ^
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:201: rangerCpp.o] Error 1
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c utility.cpp -o utility.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c utilityRcpp.cpp -o utilityRcpp.o
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/sirus/src'
ERROR: compilation failed for package ‘sirus’
* removing ‘/data/gannet/ripley/R/packages/tests-clang/sirus.Rcheck/sirus’