* installing *source* package ‘sirt’ ... ** this is package ‘sirt’ version ‘4.1-15’ ** package ‘sirt’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 21.1.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/sirt/src' /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:6: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gooijer_isop_rcpp.cpp -o gooijer_isop_rcpp.o In file included from gooijer_isop_rcpp.cpp:9: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c matrixfunctions_sirt_rcpp.cpp -o matrixfunctions_sirt_rcpp.o In file included from matrixfunctions_sirt_rcpp.cpp:8: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mle_pcm_group_rcpp.cpp -o mle_pcm_group_rcpp.o In file included from mle_pcm_group_rcpp.cpp:7: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c probs_multcat_items_counts_rcpp.cpp -o probs_multcat_items_counts_rcpp.o 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c rm_smirt_mml2_rcpp.cpp -o rm_smirt_mml2_rcpp.o In file included from rm_smirt_mml2_rcpp.cpp:7: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ 1 warning generated. 1 warning generated. 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_ccov.cpp -o sirt_rcpp_ccov.o In file included from sirt_rcpp_ccov.cpp:8: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_discrete_inverse.cpp -o sirt_rcpp_discrete_inverse.o In file included from sirt_rcpp_discrete_inverse.cpp:7: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_eigenvalues.cpp -o sirt_rcpp_eigenvalues.o In file included from sirt_rcpp_eigenvalues.cpp:7: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ 1 warning generated. 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_evm_comp_poly.cpp -o sirt_rcpp_evm_comp_poly.o In file included from sirt_rcpp_evm_comp_poly.cpp:6: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_gom_em.cpp -o sirt_rcpp_gom_em.o 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_inference_jackknife.cpp -o sirt_rcpp_inference_jackknife.o In file included from sirt_rcpp_inference_jackknife.cpp:8: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_invariance_alignment.cpp -o sirt_rcpp_invariance_alignment.o In file included from sirt_rcpp_invariance_alignment.cpp:9: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_linking_haebara.cpp -o sirt_rcpp_linking_haebara.o In file included from sirt_rcpp_linking_haebara.cpp:9: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_lq_fit.cpp -o sirt_rcpp_lq_fit.o In file included from sirt_rcpp_lq_fit.cpp:8: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_mgsem_functions.cpp -o sirt_rcpp_mgsem_functions.o In file included from sirt_rcpp_mgsem_functions.cpp:6: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ 1 warning generated. 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_monoreg.cpp -o sirt_rcpp_monoreg.o In file included from sirt_rcpp_monoreg.cpp:8: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_noharm.cpp -o sirt_rcpp_noharm.o In file included from sirt_rcpp_noharm.cpp:6: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_pbvnorm.cpp -o sirt_rcpp_pbvnorm.o 1 warning generated. 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_polychoric2.cpp -o sirt_rcpp_polychoric2.o In file included from sirt_rcpp_polychoric2.cpp:7: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_rm_proc_data.cpp -o sirt_rcpp_rm_proc_data.o 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_rm_sdt.cpp -o sirt_rcpp_rm_sdt.o In file included from sirt_rcpp_rm_sdt.cpp:7: In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more. [-W#pragma-messages] 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ /usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DBOOST_NO_LONG_LONG -DBOOST_NO_AUTO_PTR -DRCPP_USE_UNWIND_PROTECT -I'/data/gannet/ripley/R/test-clang/pbv/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sirt_rcpp_xxirt.cpp -o sirt_rcpp_xxirt.o 1 warning generated. /usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o sirt.so RcppExports.o gooijer_isop_rcpp.o matrixfunctions_sirt_rcpp.o mle_pcm_group_rcpp.o probs_multcat_items_counts_rcpp.o rm_smirt_mml2_rcpp.o sirt_rcpp_ccov.o sirt_rcpp_discrete_inverse.o sirt_rcpp_eigenvalues.o sirt_rcpp_evm_comp_poly.o sirt_rcpp_gom_em.o sirt_rcpp_inference_jackknife.o sirt_rcpp_invariance_alignment.o sirt_rcpp_linking_haebara.o sirt_rcpp_lq_fit.o sirt_rcpp_mgsem_functions.o sirt_rcpp_monoreg.o sirt_rcpp_noharm.o sirt_rcpp_pbvnorm.o sirt_rcpp_polychoric2.o sirt_rcpp_rm_proc_data.o sirt_rcpp_rm_sdt.o sirt_rcpp_xxirt.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/sirt/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/sirt/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/sirt/src' installing to /data/gannet/ripley/R/packages/tests-clang/sirt.Rcheck/00LOCK-sirt/00new/sirt/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sirt)