- using R Under development (unstable) (2025-07-18 r88425)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 20.1.8
flang version 20.1.8
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘simr/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘simr’ version ‘1.0.7’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘simr’ can be installed ... [21s/31s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [30s/41s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [13s/19s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [48s/53s] ERROR
Running ‘test-all.R’ [48s/52s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> if(require(testthat)) {
+
+ test_check("simr")
+ }
Loading required package: testthat
Loading required package: simr
Loading required package: lme4
Loading required package: Matrix
Attaching package: 'simr'
The following object is masked from 'package:lme4':
getData
The following object is masked from 'package:testthat':
compare
boundary (singular) fit: see help('isSingular')
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 112 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_testLibrary.R:31:5'): tests run ────────────────────────────────
Error in `glmer(formula = z ~ x + (1 | g), data = dd, family = poisson,
REML = FALSE, control = ctrl)`: unused argument (REML = FALSE)
Backtrace:
▆
1. ├─base::suppressWarnings(doTest(fm3, rcompare(~(1 | g), "pb"))) at test_testLibrary.R:31:5
2. │ └─base::withCallingHandlers(...)
3. ├─simr::doTest(fm3, rcompare(~(1 | g), "pb"))
4. └─simr:::doTest.default(fm3, rcompare(~(1 | g), "pb"))
5. └─simr (local) test(object)
6. └─simr (local) test(fit1, fit2)
7. ├─pbkrtest::PBmodcomp(model1, model2, nsim = getSimrOption("pbnsim"))
8. └─pbkrtest:::PBmodcomp.merMod(model1, model2, nsim = getSimrOption("pbnsim"))
9. ├─pbkrtest::PBrefdist(...)
10. └─pbkrtest:::PBrefdist.merMod(...)
11. └─pbkrtest:::do_sampling(largeModel, smallModel, nsim, cl, details)
12. ├─base::unlist(...)
13. └─parallel::mclapply(...)
14. └─base::lapply(X = X, FUN = FUN, ...)
15. └─pbkrtest (local) FUN(X[[i]], ...)
16. └─pbkrtest (local) get_fun(largeModel, smallModel, nsim = nsim.cl)
17. ├─base::unname(...)
18. ├─base::unlist(...)
19. └─base::lapply(...)
20. └─pbkrtest (local) FUN(X[[i]], ...)
21. ├─base::suppressMessages(refit_safe(sm, yyy, ctrl))
22. │ └─base::withCallingHandlers(...)
23. └─pbkrtest (local) refit_safe(sm, yyy, ctrl)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 112 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [47s/47s] OK
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR