* installing *source* package ‘sgd’ ...
** this is package ‘sgd’ version ‘1.1.3’
** package ‘sgd’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 23.1.0’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/sgd/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c sgd.cpp -o sgd.o
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo:436:
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:198:1: warning: unused function template 'arma_stop_runtime_error' [-Wunused-template]
198 | arma_stop_runtime_error(const T1& x)
| ^~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:241:1: warning: unused function template 'arma_print' [-Wunused-template]
241 | arma_print(const T1& x, const T2& y)
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:253:1: warning: unused function template 'arma_print' [-Wunused-template]
253 | arma_print(const T1& x, const T2& y, const T3& z)
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:335:1: warning: unused function template 'arma_plain_warn' [-Wunused-template]
335 | arma_plain_warn(const T1& arg1)
| ^~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:346:1: warning: unused function template 'arma_plain_warn' [-Wunused-template]
346 | arma_plain_warn(const T1& arg1, const T2& arg2)
| ^~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:357:1: warning: unused function template 'arma_plain_warn' [-Wunused-template]
357 | arma_plain_warn(const T1& arg1, const T2& arg2, const T3& arg3)
| ^~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:368:1: warning: unused function template 'arma_plain_warn' [-Wunused-template]
368 | arma_plain_warn(const T1& arg1, const T2& arg2, const T3& arg3, const T4& arg4)
| ^~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:545:1: warning: unused function template 'arma_incompat_size_string' [-Wunused-template]
545 | arma_incompat_size_string(const subview_cube<eT>& Q, const Mat<eT>& A, const char* x)
| ^~~~~~~~~~~~~~~~~~~~~~~~~
8 warnings generated.
In file included from sgd.cpp:1:
In file included from ./basedef.h:7:
In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/MatrixAccessor.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25:
/data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
26 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:2:69: note: expanded from here
2 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here
54 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:4:8: note: expanded from here
4 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from sgd.cpp:1:
In file included from ./basedef.h:7:
In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/MatrixAccessor.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25:
/data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
26 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:2:110: note: expanded from here
2 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here
54 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:4:8: note: expanded from here
4 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from sgd.cpp:1:
In file included from ./basedef.h:7:
In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/MatrixAccessor.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25:
/data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
26 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:2:136: note: expanded from here
2 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here
54 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:4:8: note: expanded from here
4 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from sgd.cpp:1:
In file included from ./basedef.h:6:
In file included from /data/localhost/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo:436:
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:241:1: warning: unused function template 'arma_print' [-Wunused-template]
241 | arma_print(const T1& x, const T2& y)
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:253:1: warning: unused function template 'arma_print' [-Wunused-template]
253 | arma_print(const T1& x, const T2& y, const T3& z)
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:346:1: warning: unused function template 'arma_plain_warn' [-Wunused-template]
346 | arma_plain_warn(const T1& arg1, const T2& arg2)
| ^~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:357:1: warning: unused function template 'arma_plain_warn' [-Wunused-template]
357 | arma_plain_warn(const T1& arg1, const T2& arg2, const T3& arg3)
| ^~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:368:1: warning: unused function template 'arma_plain_warn' [-Wunused-template]
368 | arma_plain_warn(const T1& arg1, const T2& arg2, const T3& arg3, const T4& arg4)
| ^~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:545:1: warning: unused function template 'arma_incompat_size_string' [-Wunused-template]
545 | arma_incompat_size_string(const subview_cube<eT>& Q, const Mat<eT>& A, const char* x)
| ^~~~~~~~~~~~~~~~~~~~~~~~~
9 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o sgd.so RcppExports.o sgd.o -L/data/localhost/ripley/R/R-clang/lib -lRlapack -L/data/localhost/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/sgd/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/sgd/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/sgd/src'
installing to /data/localhost/ripley/R/packages/tests-clang/sgd.Rcheck/00LOCK-sgd/00new/sgd/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sgd)