* installing *source* package ‘sf’ ... ** this is package ‘sf’ version ‘1.1-0’ ** package ‘sf’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: clang-22 -std=gnu23 configure: CXX: clang++-22 -stdlib=libc++ -std=gnu++20 checking for gdal-config... /usr/local/clang/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.11.5 checking GDAL version >= 2.0.1... yes checking for gcc... clang-22 -std=gnu23 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-22 -std=gnu23 accepts -g... yes checking for clang-22 -std=gnu23 option to enable C11 features... -std=gnu11 checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/local/clang/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available for running:... yes configure: GDAL: 3.11.5 configure: pkg-config proj exists, will use it configure: using proj.h. configure: PROJ: 9.6.2 checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes checking for geos-config... /usr/bin/geos-config checking geos-config usability... yes configure: GEOS: 3.13.0 checking GEOS version >= 3.4.0... yes checking for geos_c.h... yes checking geos: linking with -L/usr/lib64 -lgeos_c... yes configure: Package CPP flags: -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include configure: Package LIBS: -lproj -L/usr/local/clang/lib64 -lgdal -L/usr/lib64 -lgeos_c configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘clang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/sf/src' clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c bbox.cpp -o bbox.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdal.cpp -o gdal.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdal_geom.cpp -o gdal_geom.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdal_read.cpp -o gdal_read.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdal_read_stream.cpp -o gdal_read_stream.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdal_utils.cpp -o gdal_utils.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gdal_write.cpp -o gdal_write.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c geos.cpp -o geos.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c hex.cpp -o hex.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mdim.cpp -o mdim.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ops.cpp -o ops.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c polygonize.cpp -o polygonize.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c proj.cpp -o proj.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c proj_info.cpp -o proj_info.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c raster2sf.cpp -o raster2sf.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c sfc-sfg.cpp -o sfc-sfg.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c signed_area.cpp -o signed_area.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c stars.cpp -o stars.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c wkb.cpp -o wkb.o clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/webp -DWITH_GZFILEOP -DHAVE_PROJ_H -I/usr/local/clang/include -I/usr/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c zm_range.cpp -o zm_range.o clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o sf.so RcppExports.o bbox.o gdal.o gdal_geom.o gdal_read.o gdal_read_stream.o gdal_utils.o gdal_write.o geos.o hex.o mdim.o ops.o polygonize.o proj.o proj_info.o raster2sf.o sfc-sfg.o signed_area.o stars.o wkb.o zm_range.o -lproj -L/usr/local/clang/lib64 -lgdal -L/usr/lib64 -lgeos_c make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/sf/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/sf/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/sf/src' installing to /data/gannet/ripley/R/packages/tests-clang/sf.Rcheck/00LOCK-sf/00new/sf/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading in method for ‘dbWriteTable’ with signature ‘"PostgreSQLConnection","character","sf"’: no definition for class “PostgreSQLConnection” in method for ‘dbDataType’ with signature ‘"PostgreSQLConnection","sf"’: no definition for class “PostgreSQLConnection” in method for ‘coerce’ with signature ‘"Spatial","sf"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"Spatial","sfc"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"sf","Spatial"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"sfc","Spatial"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"XY","Spatial"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"crs","CRS"’: no definition for class “CRS” in method for ‘coerce’ with signature ‘"sgbp","sparseMatrix"’: no definition for class “sparseMatrix” ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sf)