* installing *source* package ‘seqinr’ ... ** package ‘seqinr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 19.1.3’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/seqinr/src' /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -DUSE_TYPE_CHECKING_STRICT -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c alignment.c -o alignment.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -DUSE_TYPE_CHECKING_STRICT -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fastacc.c -o fastacc.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -DUSE_TYPE_CHECKING_STRICT -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c getzlibsock.c -o getzlibsock.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -DUSE_TYPE_CHECKING_STRICT -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c kaks.c -o kaks.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -DUSE_TYPE_CHECKING_STRICT -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c packagename_init.c -o packagename_init.o kaks.c:966:2: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 966 | for(i= 0; i<=20; i++) rl[0][i] = rl[i][0] = minrl; | ^ kaks.c:962:1: note: previous statement is here 962 | for(i=1; i<=20; i++) | ^ /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -DUSE_TYPE_CHECKING_STRICT -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c util.c -o util.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -DUSE_TYPE_CHECKING_STRICT -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c zsockr.c -o zsockr.o 1 warning generated. /usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o seqinr.so alignment.o fastacc.o getzlibsock.o kaks.o packagename_init.o util.o zsockr.o -lz make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/seqinr/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/seqinr/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/seqinr/src' installing to /data/gannet/ripley/R/packages/tests-clang/seqinr.Rcheck/00LOCK-seqinr/00new/seqinr/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (seqinr)