* installing *source* package ‘seededlda’ ...
** this is package ‘seededlda’ version ‘1.4.3’
** package ‘seededlda’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++-22 -stdlib=libc++ -std=gnu++20 accepts -g... yes
checking for clang++-22 -stdlib=libc++ -std=gnu++20 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... clang++-22 -stdlib=libc++ -std=gnu++20 -E
checking for gcc... clang-22 -std=gnu23
checking whether the compiler supports GNU C... yes
checking whether clang-22 -std=gnu23 accepts -g... yes
checking for clang-22 -std=gnu23 option to enable C11 features... -std=gnu11
checking whether the compiler supports GNU C++... (cached) yes
checking whether clang++-22 -stdlib=libc++ -std=gnu++20 accepts -g... (cached) yes
checking for clang++-22 -stdlib=libc++ -std=gnu++20 option to enable C++11 features... (cached) none needed
checking Intel TBB existence:... yes
checking tbb available for compiling and linking:... yes
configure: Package CPP flags: -DTBB
configure: Package LIBS: -ltbb
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘clang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/seededlda/src'
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/quanteda/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../inst/include -DTBB -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/quanteda/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../inst/include -DTBB -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c lda.cpp -o lda.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/quanteda/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../inst/include -DTBB -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test-array.cpp -o test-array.o
test-array.cpp:4:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
4 | context("C++ Array object") {
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:787:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-array.cpp:4:1: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:180:25: note: expanded from macro 'context'
180 | # define context(__X__) CATCH_TEST_CASE(__X__ " | " __FILE__)
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11403:36: note: expanded from macro 'CATCH_TEST_CASE'
11403 | #define CATCH_TEST_CASE( ... ) INTERNAL_CATCH_TESTCASE( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:787:9: note: expanded from macro 'INTERNAL_CATCH_TESTCASE'
787 | INTERNAL_CATCH_TESTCASE2( INTERNAL_CATCH_UNIQUE_NAME( ____C_A_T_C_H____T_E_S_T____ ), __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:783:35: note: expanded from macro 'INTERNAL_CATCH_TESTCASE2'
783 | namespace{ Catch::AutoReg INTERNAL_CATCH_UNIQUE_NAME( autoRegistrar )( &TestName, CATCH_INTERNAL_LINEINFO, Catch::NameAndDesc( __VA_ARGS__ ) ); } \
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-array.cpp:14:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
14 | test_that("constructors are working") {
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-array.cpp:31:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
31 | test_that("accessors are working") {
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
test-array.cpp:42:5: warning: '__COUNTER__' is a C2y extension [-Wc2y-extensions]
42 | test_that("operators are working") {
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/testthat.h:181:20: note: expanded from macro 'test_that'
181 | # define test_that CATCH_SECTION
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:11407:34: note: expanded from macro 'CATCH_SECTION'
11407 | #define CATCH_SECTION( ... ) INTERNAL_CATCH_SECTION( __VA_ARGS__ )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:2479:35: note: expanded from macro 'INTERNAL_CATCH_SECTION'
2479 | if( Catch::Section const& INTERNAL_CATCH_UNIQUE_NAME( catch_internal_Section ) = Catch::SectionInfo( CATCH_INTERNAL_LINEINFO, __VA_ARGS__ ) )
| ^
/data/gannet/ripley/R/test-clang/testthat/include/testthat/vendor/catch.h:369:85: note: expanded from macro 'INTERNAL_CATCH_UNIQUE_NAME'
369 | # define INTERNAL_CATCH_UNIQUE_NAME( name ) INTERNAL_CATCH_UNIQUE_NAME_LINE( name, __COUNTER__ )
| ^
5 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/quanteda/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../inst/include -DTBB -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c test-runner.cpp -o test-runner.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/quanteda/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -I../inst/include -DTBB -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c utility.cpp -o utility.o
clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o seededlda.so RcppExports.o lda.o test-array.o test-runner.o utility.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -ltbb
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/seededlda/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/seededlda/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/seededlda/src'
installing to /data/gannet/ripley/R/packages/tests-clang/seededlda.Rcheck/00LOCK-seededlda/00new/seededlda/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seededlda)