- using R Under development (unstable) (2025-09-03 r88788)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 21.1.0
flang version 21.1.0
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘rstatix/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘rstatix’ version ‘0.7.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘rstatix’ can be installed ... [20s/45s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [41s/95s] OK
- checking Rd files ... NOTE
checkRd: (-1) box_m.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) box_m.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) box_m.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) box_m.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wilcox_test.Rd:91: Lost braces; missing escapes or markup?
91 | distribution of \code{(u+v)/2}, where \code{u} and {v} are independent, each
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [56s/92s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [22s/29s] ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [21s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rstatix)
Attaching package: 'rstatix'
The following object is masked from 'package:stats':
filter
>
> test_check("rstatix")
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-remove_ns.R:20:3'): remove_ns works when col is logical ──────
`p.false` not equal to c(0.199, 0.063, 0.009).
1/3 mismatches
[1] 0.197 - 0.199 == -0.002
── Failure ('test-wilcox_test.R:22:3'): Checking two-sample unpaired test ──────
signif(res$p, 3) not equal to 0.0645.
1/1 mismatches
[1] 0.0637 - 0.0645 == -8e-04
── Failure ('test-wilcox_test.R:33:3'): Checking two-sample paired test ────────
as.numeric(res$statistic) not equal to 350.
1/1 mismatches
[1] 369 - 350 == 19
── Failure ('test-wilcox_test.R:34:3'): Checking two-sample paired test ────────
signif(res$p, 3) not equal to 0.00431.
1/1 mismatches
[1] 0.00383 - 0.00431 == -0.00048
── Failure ('test-wilcox_test.R:45:3'): Checking pairwise comparisons ──────────
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08, 0.000177).
3/3 mismatches (average diff: 3.59e-05)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
[3] 7.57e-05 - 1.77e-04 == -1.01e-04
── Failure ('test-wilcox_test.R:56:3'): Checking pairwise comparison against ref group ──
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08).
2/2 mismatches (average diff: 3.17e-06)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
── Failure ('test-wilcox_test.R:82:3'): Checking grouped tests ─────────────────
signif(res$p, 3) not equal to c(0.0232, 0.00403, 1).
3/3 mismatches (average diff: 0.0064)
[1] 0.01980 - 0.02320 == -0.0034
[2] 0.00223 - 0.00403 == -0.0018
[3] 0.98600 - 1.00000 == -0.0140
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [12s/15s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE