* installing *source* package ‘rsgeo’ ...
** package ‘rsgeo’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rsgeo/src'
rm -Rf rsgeo.so ./rust/target/release/librsgeo.a entrypoint.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
	tar xf rust/vendor.tar.xz && \
	mkdir -p /data/gannet/ripley/R/packages/tests-clang/rsgeo/src/.cargo && \
	cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-clang/rsgeo/src/.cargo/config.toml; \
fi
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
if [ "" != "true" ]; then \
	export CARGO_HOME=/data/gannet/ripley/R/packages/tests-clang/rsgeo/src/.cargo; \
fi && \
	export PATH="/usr/local/clang/bin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
		cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target && \
		echo `cargo --version` && echo `rustc --version`;
   Compiling autocfg v1.1.0
   Compiling scopeguard v1.2.0
   Compiling semver v1.0.18
   Compiling libm v0.2.7
   Compiling lock_api v0.4.10
   Compiling num-traits v0.2.16
   Compiling rustc_version v0.4.0
   Compiling libR-sys v0.4.0
   Compiling proc-macro2 v1.0.66
   Compiling crossbeam-utils v0.8.16
   Compiling heapless v0.7.16
   Compiling memoffset v0.9.0
   Compiling cfg-if v1.0.0
   Compiling unicode-ident v1.0.11
   Compiling byteorder v1.4.3
   Compiling hash32 v0.2.1
   Compiling spin v0.9.8
   Compiling crossbeam-epoch v0.9.15
   Compiling either v1.9.0
   Compiling stable_deref_trait v1.2.0
   Compiling syn v1.0.109
   Compiling libc v0.2.147
   Compiling quote v1.0.33
   Compiling smallvec v1.11.0
   Compiling paste v1.0.14
   Compiling lazy_static v1.4.0
   Compiling extendr-engine v0.4.0
   Compiling rstar v0.11.0
   Compiling itertools v0.10.5
   Compiling approx v0.5.1
   Compiling extendr-api v0.4.0
   Compiling rayon-core v1.11.0
   Compiling geo-types v0.7.11
   Compiling earcutr v0.4.2
   Compiling num_cpus v1.16.0
   Compiling extendr-macros v0.4.0
   Compiling crossbeam-deque v0.8.3
   Compiling geographiclib-rs v0.2.3
   Compiling crossbeam-channel v0.5.8
   Compiling float_next_after v1.0.0
   Compiling robust v1.1.0
   Compiling log v0.4.20
   Compiling geo v0.26.0 (https://github.com/josiahparry/geo?branch=segmentize#c960f68b)
   Compiling rayon v1.7.0
   Compiling sfconversions v0.2.0 (https://github.com/JosiahParry/sfconversions#9e5ef5e0)
   Compiling rsgeo v0.1.3 (/data/gannet/ripley/R/packages/tests-clang/rsgeo/src/rust)
    Finished release [optimized] target(s) in 3m 51s
cargo 1.69.0
rustc 1.69.0 (84c898d65 2023-04-16) (Fedora 1.69.0-1.fc36)
if [ "" != "true" ]; then \
	rm -Rf /data/gannet/ripley/R/packages/tests-clang/rsgeo/src/.cargo  ./rust/target/release/build; \
fi
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o rsgeo.so entrypoint.o -L./rust/target/release -lrsgeo
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rsgeo/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rsgeo/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rsgeo/src'
installing to /data/gannet/ripley/R/packages/tests-clang/rsgeo.Rcheck/00LOCK-rsgeo/00new/rsgeo/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rsgeo)