* installing *source* package ‘rkriging’ ...
** this is package ‘rkriging’ version ‘1.0.2’
** package ‘rkriging’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 23.1.1’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/rkriging/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c export.cpp -o export.o
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from export.cpp:1:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from export.cpp:1:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from export.cpp:1:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from export.cpp:1:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c kernel.cpp -o kernel.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c kriging.cpp -o kriging.o
In file included from export.cpp:1:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:26:
In file included from /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp.h:47:
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on 'Kernel' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<Kernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on 'BaseKernel' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<BaseKernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'GaussianKernel' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<GaussianKernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'RQKernel' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<RQKernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'Matern12Kernel' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<Matern12Kernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'Matern32Kernel' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<Matern32Kernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'Matern52Kernel' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<Matern52Kernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'MaternKernel' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<MaternKernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'UDFKernel' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<UDFKernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'MultiplicativeRQKernel' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<MultiplicativeRQKernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'MultiplicativeMaternKernel' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<MultiplicativeMaternKernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'MultiplicativeUDFKernel' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<MultiplicativeUDFKernel>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
In file included from kriging.cpp:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from kriging.cpp:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on 'Kriging' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<Kriging>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
In file included from kernel.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from kernel.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from kriging.cpp:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from kernel.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'OrdinaryKriging' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<OrdinaryKriging>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
In file included from kriging.cpp:5:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'LimitKriging' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<LimitKriging>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
In file included from kernel.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'RationalKriging' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<RationalKriging>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'GeneralizedRationalKriging' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<GeneralizedRationalKriging>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'UniversalKriging' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<UniversalKriging>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
In file included from kernel.cpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/bessel.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/bessel_jy.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/gamma.hpp:27:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:128:69: note: expanded from here
128 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:130:8: note: expanded from here
130 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from kernel.cpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/bessel.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/bessel_jy.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/gamma.hpp:27:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:128:110: note: expanded from here
128 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:130:8: note: expanded from here
130 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from kernel.cpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/bessel.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/bessel_jy.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/gamma.hpp:27:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:128:136: note: expanded from here
128 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:130:8: note: expanded from here
130 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
kriging.cpp:338:9: warning: unused variable 'nconv' [-Wunused-variable]
338 | int nconv = eigs.compute(Spectra::SortRule::LargestAlge);
| ^~~~~
8 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/ -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/nloptr/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c utils.cpp -o utils.o
23 warnings generated.
6 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o rkriging.so RcppExports.o export.o kernel.o kriging.o utils.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/rkriging/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/rkriging/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/rkriging/src'
installing to /data/localhost/ripley/R/packages/tests-clang/rkriging.Rcheck/00LOCK-rkriging/00new/rkriging/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rkriging)