* installing *source* package ‘ribiosIO’ ...
** this is package ‘ribiosIO’ version ‘1.1.0’
** package ‘ribiosIO’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ribiosIO/src'
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c array.c -o array.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c format.c -o format.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c hlrmisc.c -o hlrmisc.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c linestream.c -o linestream.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c log.c -o log.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c plabla.c -o plabla.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c read_biokit_exprs.c -o read_biokit_exprs.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c read_chip.c -o read_chip.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c read_gct.c -o read_gct.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c read_gmt.c -o read_gmt.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I../inst/include -I../inst/include/bios_headers -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c write_gmt.c -o write_gmt.o
/usr/local/clang21/bin/clang -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o ribiosIO.so array.o format.o hlrmisc.o init.o linestream.o log.o plabla.o read_biokit_exprs.o read_chip.o read_gct.o read_gmt.o write_gmt.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ribiosIO/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ribiosIO/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ribiosIO/src'
installing to /data/gannet/ripley/R/packages/tests-clang/ribiosIO.Rcheck/00LOCK-ribiosIO/00new/ribiosIO/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ribiosIO)