* installing *source* package ‘resemble’ ...
** this is package ‘resemble’ version ‘2.2.4’
** package ‘resemble’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/resemble/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c diss_helpers.cpp -o diss_helpers.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I. -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c regression_methods.cpp -o regression_methods.o
diss_helpers.cpp:233:7: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  233 |     x.min(index); // don't assign result to a value since we are interested only in the index
      |       ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here
  544 |   [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
      |     ^
diss_helpers.cpp:280:7: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  280 |     x.min(index); // don't assign result to a value since we are interested only in the index
      |       ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:5: note: 'min' has been explicitly marked deprecated here
  544 |   [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
      |     ^
2 warnings generated.
regression_methods.cpp:163:43: warning: 'from<double, arma::Glue<arma::Mat<double>, arma::eGlue<arma::subview_col<double>, arma::subview_col<double>, arma::eglue_minus>, arma::glue_cor>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  163 |         w(i, 0) += arma::conv_to<double>::from(arma::cor(Y, X.col(i) - X.col(j)));
      |                                           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::Glue<arma::Mat<double>, arma::eGlue<arma::subview_col<double>, arma::subview_col<double>, arma::eglue_minus>, arma::glue_cor>>' has been explicitly marked deprecated here
   33 |   [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
      |     ^
regression_methods.cpp:164:43: warning: 'from<double, arma::Glue<arma::Mat<double>, arma::eGlue<arma::subview_col<double>, arma::subview_col<double>, arma::eglue_minus>, arma::glue_cor>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  164 |         w(j, 0) -= arma::conv_to<double>::from(arma::cor(Y, X.col(i) - X.col(j)));
      |                                           ^
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:33:5: note: 'from<double, arma::Glue<arma::Mat<double>, arma::eGlue<arma::subview_col<double>, arma::subview_col<double>, arma::eglue_minus>, arma::glue_cor>>' has been explicitly marked deprecated here
   33 |   [[deprecated("replace conv_to<...>::from(X) with as_scalar(X)")]] inline static out_eT from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk = nullptr);
      |     ^
2 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o resemble.so RcppExports.o diss_helpers.o regression_methods.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/resemble/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/resemble/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/resemble/src'
installing to /data/gannet/ripley/R/packages/tests-clang/resemble.Rcheck/00LOCK-resemble/00new/resemble/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (resemble)