* installing *source* package ‘rego’ ... ** package ‘rego’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 19.1.3’ using C++ compiler: ‘clang version 19.1.3’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rego/src' /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/armadillo/include -I../inst/include/optim-master/header_only_version -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include/armadillo/include -I../inst/include/optim-master/header_only_version -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rego.cpp -o rego.o rego.cpp:573:7: warning: variable 's' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 573 | if(univariate==0){ | ^~~~~~~~~~~~~ rego.cpp:667:5: note: uninitialized use occurs here 667 | s=s-1; | ^ rego.cpp:573:4: note: remove the 'if' if its condition is always true 573 | if(univariate==0){ | ^~~~~~~~~~~~~~~~~ rego.cpp:508:36: note: initialize the variable 's' to silence this warning 508 | uli t, add, edge, imq, limodR, s; | ^ | = 0 rego.cpp:1102:14: warning: unused variable 'n_tot_mod_c' [-Wunused-variable] 1102 | double n_tot_mod_c=nvars*100; | ^~~~~~~~~~~ rego.cpp:1103:14: warning: unused variable 'C_c' [-Wunused-variable] 1103 | double C_c=0.01; | ^~~ rego.cpp:1109:14: warning: unused variable 'nc' [-Wunused-variable] 1109 | uli nr,nc,nvar_max; | ^~ rego.cpp:1111:12: warning: unused variable 'univariate' [-Wunused-variable] 1111 | bool univariate=1; | ^~~~~~~~~~ rego.cpp:1134:14: warning: unused variable 'log_FBF' [-Wunused-variable] 1134 | double log_FBF; | ^~~~~~~ rego.cpp:1887:6: warning: variable 'L' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 1887 | if(pred_only==0){ | ^~~~~~~~~~~~ rego.cpp:1899:13: note: uninitialized use occurs here 1899 | str_out.L=L; | ^ rego.cpp:1887:3: note: remove the 'if' if its condition is always true 1887 | if(pred_only==0){ | ^~~~~~~~~~~~~~~~ rego.cpp:1886:11: note: initialize the variable 'L' to silence this warning 1886 | double L, L_adj; | ^ | = 0.0 rego.cpp:1887:6: warning: variable 'L_adj' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 1887 | if(pred_only==0){ | ^~~~~~~~~~~~ rego.cpp:1900:17: note: uninitialized use occurs here 1900 | str_out.L_adj=L_adj; | ^~~~~ rego.cpp:1887:3: note: remove the 'if' if its condition is always true 1887 | if(pred_only==0){ | ^~~~~~~~~~~~~~~~ rego.cpp:1886:18: note: initialize the variable 'L_adj' to silence this warning 1886 | double L, L_adj; | ^ | = 0.0 In file included from rego.cpp:48: In file included from ../inst/include/armadillo/include/armadillo:611: ../inst/include/armadillo/include/armadillo_bits/auxlib_meat.hpp:3388:34: warning: unused typedef 'eT' [-Wunused-local-typedef] 3388 | typedef typename T1::elem_type eT; | ^ 9 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o rego.so init.o rego.o -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rego/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rego/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rego/src' installing to /data/gannet/ripley/R/packages/tests-clang/rego.Rcheck/00LOCK-rego/00new/rego/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rego)