* installing *source* package ‘reems’ ... ** this is package ‘reems’ version ‘0.1.0’ ** package ‘reems’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘clang version 23.1.1’ using C++17 make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/reems/src' /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c RcppExports.cpp -o RcppExports.o /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c draw.cpp -o draw.o In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from draw.cpp:2: In file included from ./draw.h:11: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from draw.cpp:2: In file included from ./draw.h:11: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from draw.cpp:2: In file included from ./draw.h:11: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from draw.cpp:2: In file included from ./draw.h:11: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. In file included from draw.cpp:2: In file included from ./draw.h:11: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :277:69: note: expanded from here 277 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :279:8: note: expanded from here 279 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from draw.cpp:2: In file included from ./draw.h:11: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :277:110: note: expanded from here 277 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :279:8: note: expanded from here 279 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from draw.cpp:2: In file included from ./draw.h:11: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :277:136: note: expanded from here 277 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :279:8: note: expanded from here 279 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ 8 warnings generated. /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c eems.cpp -o eems.o /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c graph.cpp -o graph.o /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c habitat.cpp -o habitat.o In file included from eems.cpp:2: In file included from ./eems.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from eems.cpp:2: In file included from ./eems.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c mcmc.cpp -o mcmc.o In file included from eems.cpp:2: In file included from ./eems.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from eems.cpp:2: In file included from ./eems.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from eems.cpp:2: In file included from ./eems.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:69: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from eems.cpp:2: In file included from ./eems.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:110: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from eems.cpp:2: In file included from ./eems.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:136: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c reems.cpp -o reems.o /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c runeems_snps.cpp -o runeems_snps.o In file included from graph.cpp:6: In file included from ./graph.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from graph.cpp:6: In file included from ./graph.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from graph.cpp:6: In file included from ./graph.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:3: In file included from ./util.hIn file included from :graph.cpp16:: 6In file included from : /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.hIn file included from :./graph.h25:: 3In file included from : /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.hIn file included from :./util.h29:: 16In file included from : /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseIn file included from :/data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h26:: 25In file included from : /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCoreIn file included from :/data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h61:: 37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra::27345:: 13:/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h :246warning: :7variable 'count' set but not used [-Wunused-but-set-variable]: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | 273 | i n t c oIunndte x= c0o;u n t| ^= 0; | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from mcmc.cpp:6: In file included from ./mcmc.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from mcmc.cpp:6: In file included from ./mcmc.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from mcmc.cpp:6: In file included from ./mcmc.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from graph.cpp:6: In file included from ./graph.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:69: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from graph.cpp:6: In file included from ./graph.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:110: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from graph.cpp:6: In file included from ./graph.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:136: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from mcmc.cpp:6: In file included from ./mcmc.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:69: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:110: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:136: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from mcmc.cpp:6: In file included from ./mcmc.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:69: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from mcmc.cpp:6: In file included from ./mcmc.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:110: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from mcmc.cpp:6: In file included from ./mcmc.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:136: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:3: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from reems.cpp:4: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from reems.cpp:4: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from reems.cpp:4: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from reems.cpp:4: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:3: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACIn file included from Ereems.cpp_:S4T: DIn file included from ./util.h :| 22 ^: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h::1874: :In file included from 39/data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:: 23note: : expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp :7431 | : #In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp :d47e: fIn file included from i/data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hppn:e65 : _L/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hppI:B29C:P1P:_ Bwarning: Eunused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]G IN_N A29M | EBSOPOASCTE__MSOTVDE __SLTIDB_CNPSP__BBEEGG I N| _^U NVE/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hppR:S21I:O34N:E Dnote: _expanded from macro 'BOOST_MOVE_STD_NS_BEG'N AME S21P | A C E _#SdTeDf iinnel iBnOeO SnTa_mMeOsVpEa_cSeT D__LNISB_CBPEPG_ A_BLII_BNCAPMPE_SBPEAGCIEN _{N A M| E ^S PA/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hC:E70_:S40T:D note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'| ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h70: | 74 : 39 : _note: Lexpanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'I BCPP _74P | U#S H _dEeXfTiEnNeS I_OLNI_BDCIPAPG_NBOESGTIINC_SN A_MLEISBPCAPCPE__ESNTDD_ E_XLPILBICCPIPT__BAEBGII_NA_NUNNOVTEARTSIIOONNSE Dn_aNmAeMsEpSaPcAeC E__LSITBDC PiPn_lNiAnMeE SnPaAmCeEs_pVaIcSeI B_ILLIIBTCYP stPd_ A{B I _| N ^A ME/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hS:P51A:C3E: {note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h51: | 70 : 40_:P rnote: aexpanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'g ma(_L I70B | C P P _ T_OLSITBRCIPNPG_(PcUlSaHn_gE XaTtEtNrSiIbOuNt_eD I_ALGiNbOcSxTxIECxSp l_iLcIiBtCAPBPI_AEnNnDo_tEaXtPiLoInCsI.Tp_uAsBhI(_ A N N O T A T I O N S n a m e s p a c e _ L I B C P P _ N A M E S P A\C E _| V ^I SIB:I25L:I69T:Y note: sexpanded from heret d { | ^ 25 | /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h :c51l:a3n:g note: aexpanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS't trib u51t | e __LPirbacgxmxaE(x_pLlIiBcCiPtPA_BTIOASnTnRoItNaGt(icolnasn.gp uastht(r i_b_uattet r_iLbiubtcex_x_E(x(p_l_iecxictlAuBdIeA_nfnrootma_teixopnlsi.cpiuts_hi(n s t a n t i a t i o n _ _ , _ _ v i s i b i l i t y _ _ ( " h i d d e n " ) , \_ _ a| b ^i _ta:g56_:_69(:" nnote: qexpanded from heree 230101 "56) | ) )c,l aanpgp layt_ttroi b=u tfeu n_cLtiibocnx)x E x| p ^l ici/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hppt:A61B:I1A:n nnote: o'#pragma clang attribute push' regions ends heret at i61o | nBsO.OpSuTs_hM(O V_E__aStTtDr_iNbSu_tEeN_D_ ( (| _^_ ex/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hppc:l22u:d34e:_ fnote: rexpanded from macro 'BOOST_MOVE_STD_NS_END'o m_ e22x | p l i c#idte_fiinnset aBnOtOiSaTt_iMoOnV_E__,S T_D__vNiSs_iEbNiDl i_tLyI_B_C(P"Ph_iEdNdDe_nN"A)M,E S_P_AaCbEi__StTaDg _ _| ( ^" nq/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.he:2753:0391:0 1note: "expanded from macro '_LIBCPP_END_NAMESPACE_STD') )), 75a | p#p l yd_etfoi n=e f_uLnIcBtCiPoPn_)E N D| _ ^N AME/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hppS:P61A:C1E:_ Snote: T'#pragma clang attribute push' regions ends hereD } 61_ | LBIOBOCSPTP__MEONVDE__USNTVDE_RNSSI_OENNEDD _ N| A^M ES/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hppP:A22C:E34_:S Tnote: Dexpanded from macro 'BOOST_MOVE_STD_NS_END' | ^ 22 | /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h : 72 :#51d:e fnote: iexpanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'n e BO O72S | T#_ M OdVeEf_iSnTeD __NLSI_BECNPDP __ELNIDB_CUPNPV_EERNSDI_ONNAEMDE_SNPAAMCEES_PSATCDE _ S| T ^D }/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h :_75L:I39B:C Pnote: Pexpanded from macro '_LIBCPP_END_NAMESPACE_STD'_ BEG I75N | _#E X PdLeIfCiInTe_ A_BLII_BACNPNPO_TEANTDI_ONNASM E_SLPIABCCEP_PS_TPDO P}_ E_XLTIEBNCSPIPO_NE_NDDI_AUGNNVOESRTSIICOSN E D| _ ^N AM/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hE:S57P:A48C:E _note: Sexpanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'T D | ^57 | #/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hd:e72f:i51n:e note: _expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'L IBCP P72_ | B#E G IdNe_fEiXnPeL I_CLIITB_CAPBPI__EANNDN_OUTNAVTEIROSNISO N_EPDr_aNgAmMaE(S"PcAlCaEn_gS TaDt t}r i_bLuItBeC P_PL_iBbEcGxIxNE_xEpXlPiLcIiCtIATB_IAABnIn_oAtNaNtOiToAnTsI.OpNoSp "_)L I B| C ^P P_:P27O:P8_:E Xnote: Texpanded from hereE NS I27O | N _cDlIaAnGgN OaStTtIrCiSb u t| e ^ _L/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hi:b57c:x48x:E xnote: pexpanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'l icit A57B | I#Adnenfoitnaet i_oLnIsB.CpPoPp_ B E| G ^I N_EXPLIIn file included from Cruneems_snps.cppI:T6_: AIn file included from B./eems.hI:_3A: NIn file included from N./util.hO:T22A: TIn file included from I/data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hppO:N18S: In file included from _/data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hppP:r23a: gIn file included from m/data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hppa:(33": cIn file included from l/data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hppa:n31g: In file included from a/data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hppt:t47r: iIn file included from b/data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hppu:t65e: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp_:L29i:b1c:x xwarning: Eunused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]x pl i29c | iBtOAOBSITA_nMnOoVtEa_tSiToDn_sN.Sp_oBpE"G) | | ^ ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp::2158::348:: note: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'expanded from here 2158 | | c l#adnegf iantet rBiObOuStTe_ M_OLViEb_cSxTxDE_xNpSl_iBcEiGt A_BLIIABnCnPoPt_aBtEiGoInNs_.NpAoMpE S P| A ^C E_STD | ^In file included from reems.cpp:4/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h: :In file included from 74./util.h::3922:: In file included from note: /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hppexpanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD': 18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23 : 74In file included from | /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp#: 33 : dIn file included from e/data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hppf:i31n: eIn file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp_:L47I: BIn file included from C/data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hppP:P65_: B/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hppE:G29I:N1_:N Awarning: Munused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]E SP A29C | EB_OSOTSDT __MLOIVBEC_PSPT_DB_ENGSI_NB_EUGN V E| R^S IO/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hppN:E21D:_34N:A Mnote: Eexpanded from macro 'BOOST_MOVE_STD_NS_BEG'S PAC E21_ | S T D #idnelfiinnee nBaOmOeSsTp_aMcOeV E__LSITBDC_PNPS__ABBEIG_ N_ALMIEBSCPPAPC_EB E{G I N| _ ^N AM/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hE:S70P:A40C:E _note: Sexpanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'T D | ^ 70 | /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h : 74 : 39_:L Inote: Bexpanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'C PP_P U74S | H#_ E XdTeEfNiSnIeO N__LDIIBACGPNPO_SBTEIGCISN __NLAIMBECSPPPA_CEEN_DS_TEDX P_LLIICBICTP_PA_BBIE_GAINNN_OUTNAVTEIROSNISO NnEaDm_eNsApMaEcSeP A_CLEI_BSCTPDP _iNnAlMiEnSeP AnCaEm_eVsIpSaIcBeI L_ILTIYB CsPtPd_ A{B I _| N ^A ME/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hS:P51A:C3E: {note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h51: | 70 : 40_:P rnote: aexpanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'g ma(_L I70B | C P P _ T_OLSITBRCIPNPG_(PcUlSaHn_gE XaTtEtNrSiIbOuNt_eD I_ALGiNbOcSxTxIECxSp l_iLcIiBtCAPBPI_AEnNnDo_tEaXtPiLoInCsI.Tp_uAsBhI(_ A N N O T A T I O N S n a m e s p a c e _ L I B C P P _ N A M E S P A C E _ V\I S I| B ^I LIT:Y25 :s110t:d note: {expanded from here | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h :2551 | : 3c:l anote: nexpanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'g att r51i | b u t_eP r_aLgimbac(x_xLEIxBpClPiPc_iTtOASBTIRAInNnGo(tcaltainogn sa.tptursihb(u t_e_ a_tLtirbicbxuxtEex_p_l(i(c_i_teAxBcIlAundneo_tfartoimo_nesx.ppluischi(t _ i n s t a n t i a t i o n _ _ , _ _ v i s i b i l i t y _ _ ( " h i d d e n "\) , | _ ^_ abi:_56t:a110g:_ _note: (expanded from here" nqe230 1560 | 1 "c)l)a)n,g aaptptlryi_btuot e= _fLuinbcctxixoEnx)p l i| c ^i tA/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hppB:I61A:n1n:o tnote: a'#pragma clang attribute push' regions ends heret io n61s | .BpOuOsShT(_ M_O_VaEt_tSrTiDb_uNtSe__E_N(D( _ _| e^x cl/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hppu:d22e:_34f:r onote: mexpanded from macro 'BOOST_MOVE_STD_NS_END'_ ex p22l | i c i t#_dienfsitnaen tBiOaOtSiTo_nM_O_V,E __S_TvDi_sNiSb_iElNiDt y__L_I(B"ChPiPd_dEeNnD"_)N,A M_E_SaPbAiC_Et_aSgT_D_ ( "| n ^q e2/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h3:0751:0391:" )note: )expanded from macro '_LIBCPP_END_NAMESPACE_STD') , a p75p | l#y _ tdoe f=i nfeu n_cLtIiBoCnP)P _ E| N ^D _NAM/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hppE:S61P:A1C:E _note: S'#pragma clang attribute push' regions ends hereT D }61 | _BLOIOBSCTP_PM_OEVNED__SUTNDV_ENRSS_IEONNDE D _| N^A ME/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hppS:P22A:C34E:_ Snote: Texpanded from macro 'BOOST_MOVE_STD_NS_END'D | ^22 | /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h : 72#:d51e:f inote: nexpanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'e BOO S72T | _#M O VdEe_fSiTnDe_ N_SL_IEBNCDP P__LEINBDC_PUPN_VEENRDS_INOANMEEDS_PNAACMEE_SSPTADC E _| S ^T D /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h}: 75_:L39I:B Cnote: Pexpanded from macro '_LIBCPP_END_NAMESPACE_STD'P _BE G75I | N#_ E XdPeLfIiCnIeT __ALBIIB_CAPNPN_OETNADT_INOANMSE S_PLAICBEC_PSPT_DP O}P __ELXITBECNPSPI_OENN_DD_IUANGVNEORSSTIIOCSN E D| _ ^N A/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hM:E57S:P48A:C Enote: _expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'S TD | ^57 | #/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hd:e72f:i51n:e note: _expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'L IBCP P72_ | B#E G IdNe_fEiXnPeL I_CLIITB_CAPBPI__EANNDN_OUTNAVTEIROSNISO N_EPDr_aNgAmMaE(S"PcAlCaEn_gS TaDt t}r i_bLuItBeC P_PL_iBbEcGxIxNE_xEpXlPiLcIiCtIATB_IAABnIn_oAtNaNtOiToAnTsI.OpNoSp "_)L I B| C ^P P_:P27O:P8_:E Xnote: Texpanded from hereE NS I27O | N _cDlIaAnGgN OaStTtIrCiSb u t| e ^ _L/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hi:b57c:x48x:E xnote: pexpanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'l icit A57B | I#Adnenfoitnaet i_oLnIsB.CpPoPp_ B E| G ^I N_EXPLIn file included from Iruneems_snps.cppC:I6T: _In file included from A./eems.hB:I3_: AIn file included from N./util.hN:O22T: AIn file included from T/data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hppI:O18N: SIn file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp_:P23r: aIn file included from g/data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hppm:a33(: "In file included from c/data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hppl:a31n: gIn file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hppa:t47t: rIn file included from i/data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hppb:u65t: e/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp :_29L:i1b:c xwarning: xunused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]E xp l29i | cBiOtOASBTI_AMnOnVoEt_aStTiDo_nNsS._pBoEpG" ) | ^| ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21::5834::8 :note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'note: expanded from here 21 | 58 | clan g# daetftirnieb uBtOeO S_TL_iMbOcVxEx_ESxTpDl_iNcSi_tBAEBGI A_nLnIoBtCaPtPi_oBnEsG.IpNo_pN A M| E ^S PACE_STD | ^In file included from reems.cpp:/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h4:: 74In file included from :./util.h39::22 : In file included from note: /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hppexpanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD': 18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp: 2374: | In file included from #/data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp : 33d: eIn file included from f/data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hppi:n31e: In file included from _/data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hppL:I47B: CIn file included from P/data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hppP:_65B: E/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hppG:I29N:_1N:A Mwarning: Eunused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]S PAC E29_ | SBTODO S_TL_IMBOCVPEP__SBTEDG_INNS__UBNEVGE R S| I^O NE/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hppD:_21N:A34M:E Snote: Pexpanded from macro 'BOOST_MOVE_STD_NS_BEG'A CE_STD i21n | line n a m#edsepfaicnee _BLOIOBSCTP_PM_OAVBEI__SNTADM_ENSSP_ABCEEG {_ L I| B ^C PP/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h_:B70E:G40I:N _note: Nexpanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'A MESP A70C | E _ S T D_ L I| B ^C PP/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h_:P74U:S39H:_ Enote: Xexpanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'T ENSI O74N | _#D I AdGeNfOiSnTeI C_SL I_BLCIPBPC_PBPE_GEINND__NEAXMPELSIPCAICTE__ASBTID_ A_NLNIOBTCAPTPI_OBNESG InNa_mUeNsVpEaRcSeI O_NLEIDB_CNPAPM_ENSAPMAECSEP_ASCTED_ ViInSlIiBnIeL InTaYm esstpda c{e _| L ^I BC/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hP:P51_:A3B:I _note: Nexpanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'A MESPA C51E | { _ P| r ^a gm/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.ha:(70_:L40I:B Cnote: Pexpanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'P _TOST R70I | N G ( c l_aLnIgB CaPtPt_rPiUbSuHt_eE X_TLEiNbScIxOxNE_xDpIlAiGcNiOtSATBIICASn n_oLtIaBtCiPoPn_sE.NpDu_sEhX(P L I C I T _ A B I _ A N N O T A T I O N S n a m e s p a c e _ L I B C P P _ N\A M E| S ^P ACE:_25V:I136S:I Bnote: Iexpanded from hereL ITY st d25 | { c l| a ^n g /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.ha:t51t:r3i:b unote: texpanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'e _Li b51c | x x E_xPprlaigcmiat(A_BLIIABnCnPoPt_aTtOiSoTnRsI.NpGu(schl(a n_g_ aattttrriibbuuttee_ __(L(i_b_cexxxcElxupdlei_cfirtoAmB_IeAxnpnloitcaitti_oinnss.tpaunsthi(a t i o n _ _ , _ _ v i s i b i l i t y _ _ ( " h i d d e n " ) , _ _ a b i _ t\a g _| _ ^( "nq:e562:31360:1 0note: 1expanded from here" )) )56, | acplpalnyg_ taot t=r ifbuuntcet i_oLni)b c x| x ^E xpl/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hppi:c61i:t1A:B Inote: A'#pragma clang attribute push' regions ends heren no t61a | tBiOoOnSsT._pMuOsVhE(_ S_T_Da_tNtSr_iEbNuDt e _| _^( (_/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp_:e22x:c34l:u dnote: eexpanded from macro 'BOOST_MOVE_STD_NS_END'_ fro m22_ | e x p l#idceifti_nien sBtOaOnStTi_aMtOiVoEn__S_T,D __N_Sv_iEsNiDb i_lLiItByC_P_P(_"EhNiDd_dNeAnM"E)S,P A_C_Ea_bSiT_Dt a g| _ ^_ ("/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hn:q75e:2393:0 1note: 0expanded from macro '_LIBCPP_END_NAMESPACE_STD' 1") )75) | ,# a pdpelfyi_nteo _=L IfBuCnPcPt_iEoNnD)_ N A| M ^E SPAC/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hppE:_61S:T1D: }note: '#pragma clang attribute push' regions ends here_ LI B61C | PBPO_OESNTD__MUONVVEE_RSSTIDO_NNESD__ENNADM E S| P^A CE/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp_:S22T:D34 : | note: ^expanded from macro 'BOOST_MOVE_STD_NS_END' /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72 :2251 | : note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'# defi n72e | #B O OdSeTf_iMnOeV E__LSITBDC_PNPS__EENNDD_ U_NLVIEBRCSPIPO_NEENDD__NNAAMMEESSPPAACCEE__SSTTDD } | _ ^L IB/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hC:P75P:_39B:E Gnote: Iexpanded from macro '_LIBCPP_END_NAMESPACE_STD'N _EX P75L | I#C I Td_eAfBiIn_eA N_NLOITBACTPIPO_NESN D__LNIABMCEPSPP_APCOEP__SETXDT E}N S_ILOINB_CDPIPA_GENNODS_TUINCVSE R S| I ^O NE/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hD:_57N:A48M:E Snote: Pexpanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'A CE_S T57D | # d| e ^f in/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.he: 72_:L51I:B Cnote: Pexpanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'P _BEGI N72_ | E#X P LdIeCfIiTn_eA B_IL_IABNCNPOPT_AETNIDO_NUSN V_EPRrSaIgOmNaE(D"_cNlAaMnEgS PaAtCtEr_iSbTuDt e} __LLiIbBcCxPxPE_xBpElGiIcNi_tEAXBPILAInCnIoTt_aAtBiIo_nAsN.NpOoTpA"T)I O N| S ^ _L:I27B:C8P:P _note: Pexpanded from hereO P_ E27X | T EcNlSaInOgN _aDtItArGiNbOuStTeI C_SL i b| c ^x xE/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.hx:p57l:i48c:i tnote: Aexpanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'B IAnn o57t | a#tdieofnisn.ep o_pL I B| C ^P P_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :58:8: note: expanded from here 58 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from eems.cpp:2: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :14:69: note: expanded from here 14 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :16:8: note: expanded from here 16 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from eems.cpp:2: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :14:110: note: expanded from here 14 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :16:8: note: expanded from here 16 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from eems.cpp:2: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :14:136: note: expanded from here 14 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :16:8: note: expanded from here 16 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from eems.cpp:2: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :23:69: note: expanded from here 23 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :25:8: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from eems.cpp:2: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :23:110: note: expanded from here 23 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :25:8: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from eems.cpp:2: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :23:136: note: expanded from here 23 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :25:8: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ 8 warnings generated. /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c util.cpp -o util.o /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c voronoi2raster.cpp -o voronoi2raster.o In file included from graph.cpp:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :55:69: note: expanded from here 55 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :57:8: note: expanded from here 57 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from graph.cpp:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :55:110: note: expanded from here 55 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :57:8: note: expanded from here 57 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from graph.cpp:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :55:136: note: expanded from here 55 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :57:8: note: expanded from here 57 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from graph.cpp:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :64:69: note: expanded from here 64 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :66:8: note: expanded from here 66 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from graph.cpp:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :64:110: note: expanded from here 64 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :66:8: note: expanded from here 66 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from graph.cpp:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :64:136: note: expanded from here 64 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :66:8: note: expanded from here 66 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :55:69: note: expanded from here 55 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :57:8: note: expanded from here 57 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :55:110: note: expanded from here 55 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :57:8: note: expanded from here 57 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :55:136: note: expanded from here 55 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :57:8: note: expanded from here 57 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :64:69: note: expanded from here 64 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :66:8: note: expanded from here 66 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :64:110: note: expanded from here 64 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :66:8: note: expanded from here 66 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from habitat.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :64:136: note: expanded from here 64 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :66:8: note: expanded from here 66 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ eems.cpp:258:10: warning: unused variable 'triDeltaQD' [-Wunused-variable] 258 | double triDeltaQD, ll_atfixdf; | ^~~~~~~~~~ eems.cpp:258:22: warning: unused variable 'll_atfixdf' [-Wunused-variable] 258 | double triDeltaQD, ll_atfixdf; | ^~~~~~~~~~ In file included from util.cpp:6: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from util.cpp:6: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from util.cpp:6: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from util.cpp:6: In file included from ./util.h:16: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from voronoi2raster.cpp:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ graph.cpp:48:7: warning: unused variable 'oDemes' [-Wunused-variable] 48 | int oDemes = get_num_obsrv_demes(); | ^~~~~~ In file included from voronoi2raster.cpp:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :14:69: note: expanded from here 14 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :16:8: note: expanded from here 16 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :14:110: note: expanded from here 14 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :16:8: note: expanded from here 16 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :14:136: note: expanded from here 14 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :16:8: note: expanded from here 16 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :23:69: note: expanded from here 23 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :25:8: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :23:110: note: expanded from here 23 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :25:8: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from runeems_snps.cpp:6: In file included from ./eems.h:6: In file included from ./graph.h:4: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :23:136: note: expanded from here 23 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :25:8: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ graph.cpp:140:7: warning: unused variable 'nEdges' [-Wunused-variable] 140 | int nEdges = DemePairs.rows(); | ^~~~~~ In file included from voronoi2raster.cpp:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from reems.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :55:69: note: expanded from here 55 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :57:8: note: expanded from here 57 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from reems.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :55:110: note: expanded from here 55 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :57:8: note: expanded from here 57 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from reems.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:27:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 27 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :55:136: note: expanded from here 55 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/std_fwd.hpp:40:1: note: '#pragma clang attribute push' regions ends here 40 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :57:8: note: expanded from here 57 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from reems.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :64:69: note: expanded from here 64 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :66:8: note: expanded from here 66 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from reems.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :64:110: note: expanded from here 64 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :66:8: note: expanded from here 66 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from reems.cpp:6: In file included from ./habitat.h:5: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:63: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:26: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:37: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/rtree.hpp:64: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/geometry/index/detail/rtree/node/node.hpp:20: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/vector.hpp:32: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/advanced_insert_int.hpp:28: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/copy_move_algo.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/iterator.hpp:24: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/intrusive/detail/iterator.hpp:27: /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:63:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 63 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :64:136: note: expanded from here 64 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/iterator_traits.hpp:81:1: note: '#pragma clang attribute push' regions ends here 81 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :66:8: note: expanded from here 66 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from voronoi2raster.cpp:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from util.cpp:6: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:69: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from util.cpp:6: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:110: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from util.cpp:6: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:136: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from voronoi2raster.cpp:14: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :3:69: note: expanded from here 3 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :5:8: note: expanded from here 5 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from voronoi2raster.cpp:14: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :3:110: note: expanded from here 3 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :5:8: note: expanded from here 5 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from voronoi2raster.cpp:14: In file included from ./util.h:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :3:136: note: expanded from here 3 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :5:8: note: expanded from here 5 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ 16 warnings generated. 14 warnings generated. 14 warnings generated. voronoi2raster.cpp:15:14: warning: unused variable 'pi_180' [-Wunused-const-variable] 15 | const double pi_180 = M_PI / 180.0; | ^~~~~~ 14 warnings generated. 9 warnings generated. 16 warnings generated. 8 warnings generated. /usr/local/clang23/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o reems.so RcppExports.o draw.o eems.o graph.o habitat.o mcmc.o reems.o runeems_snps.o util.o voronoi2raster.o make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/reems/src' make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/reems/src' make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/reems/src' installing to /data/localhost/ripley/R/packages/tests-clang/reems.Rcheck/00LOCK-reems/00new/reems/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reems)