* installing *source* package ‘redist’ ...
** this is package ‘redist’ version ‘4.3.0’
** package ‘redist’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 20.1.7’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/redist/src'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c adj_reduce.cpp -o adj_reduce.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c check_contiguity.cpp -o check_contiguity.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c coarsen.cpp -o coarsen.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c coloring.cpp -o coloring.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c compact_vectorized.cpp -o compact_vectorized.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c constraint_calc_helper.cpp -o constraint_calc_helper.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c contiguity.cpp -o contiguity.o
constraint_calc_helper.cpp:124:22: warning: variable 'match' set but not used [-Wunused-but-set-variable]
  124 |   int i; int j; bool match; arma::uvec store_in(vec1.n_elem);
      |                      ^
1 warning generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c cores.cpp -o cores.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c crsg.cpp -o crsg.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c distance_helpers.cpp -o distance_helpers.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c kirchhoff.cpp -o kirchhoff.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c make_swaps_helper.cpp -o make_swaps_helper.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c map_calc.cpp -o map_calc.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c mcmc_gibbs.cpp -o mcmc_gibbs.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c merge_split.cpp -o merge_split.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c pareto.cpp -o pareto.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c pop_helpers.cpp -o pop_helpers.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c random.cpp -o random.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c renumber.cpp -o renumber.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rsg.cpp -o rsg.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c scorer_helpers.cpp -o scorer_helpers.o
In file included from renumber.cpp:4:
./hungarian.h:177:25: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation]
  177 |                         for (row = 0; row<nOfRows; row++)
      |                         ^
./hungarian.h:169:21: note: previous statement is here
  169 |                     if (fabs(distMatrix[row + nOfRows*col]) < DBL_EPSILON)
      |                     ^
./hungarian.h:258:13: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
  258 |             if (nOfCoveredColumns == minDim)
      |             ^
./hungarian.h:254:9: note: previous statement is here
  254 |         for (col = 0; col<nOfColumns; col++)
      |         ^
./hungarian.h:292:33: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
  292 |                                 if (starCol == nOfColumns) /* no starred zero found */
      |                                 ^
./hungarian.h:288:29: note: previous statement is here
  288 |                             for (starCol = 0; starCol<nOfColumns; starCol++)
      |                             ^
./hungarian.h:330:13: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
  330 |             while (starRow<nOfRows)
      |             ^
./hungarian.h:326:9: note: previous statement is here
  326 |         for (starRow = 0; starRow<nOfRows; starRow++)
      |         ^
./hungarian.h:342:21: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
  342 |                     newStarMatrix[primeRow + nOfRows*primeCol] = true;
      |                     ^
./hungarian.h:337:17: note: previous statement is here
  337 |                 for (primeCol = 0; primeCol<nOfColumns; primeCol++)
      |                 ^
./hungarian.h:383:21: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
  383 |                     for (row = 0; row<nOfRows; row++)
      |                     ^
./hungarian.h:374:17: note: previous statement is here
  374 |                 for (col = 0; col<nOfColumns; col++)
      |                 ^
./hungarian.h:389:25: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
  389 |                         for (col = 0; col<nOfColumns; col++)
      |                         ^
./hungarian.h:383:21: note: previous statement is here
  383 |                     for (row = 0; row<nOfRows; row++)
      |                     ^
./hungarian.h:395:29: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
  395 |                             step3(assignment, distMatrix, starMatrix, newStarMatrix, primeMatrix, coveredColumns, coveredRows, nOfRows, nOfColumns, minDim);
      |                             ^
./hungarian.h:389:25: note: previous statement is here
  389 |                         for (col = 0; col<nOfColumns; col++)
      |                         ^
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c shatter_search.cpp -o shatter_search.o
8 warnings generated.
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c smc.cpp -o smc.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c smc_base.cpp -o smc_base.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c splits.cpp -o splits.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c sw_mh_alg.cpp -o sw_mh_alg.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c sw_mh_helper.cpp -o sw_mh_helper.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c tree_op.cpp -o tree_op.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c varinfo.cpp -o varinfo.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -I'/data/gannet/ripley/R/test-clang/cli/include' -I'/data/gannet/ripley/R/test-clang/redistmetrics/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c wilson.cpp -o wilson.o
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o redist.so RcppExports.o adj_reduce.o check_contiguity.o coarsen.o coloring.o compact_vectorized.o constraint_calc_helper.o contiguity.o cores.o crsg.o distance_helpers.o kirchhoff.o make_swaps_helper.o map_calc.o mcmc_gibbs.o merge_split.o pareto.o pop_helpers.o random.o renumber.o rsg.o scorer_helpers.o shatter_search.o smc.o smc_base.o splits.o sw_mh_alg.o sw_mh_helper.o tree_op.o varinfo.o wilson.o -latomic -lpthread -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/redist/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/redist/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/redist/src'
installing to /data/gannet/ripley/R/packages/tests-clang/redist.Rcheck/00LOCK-redist/00new/redist/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (redist)