* installing *source* package ‘ragnar’ ...
** this is package ‘ragnar’ version ‘0.3.0’
** package ‘ragnar’ successfully unpacked and MD5 sums checked
** using staged installation
Downloading onnxruntime (17.2MiB)
Downloaded onnxruntime
Installed 48 packages in 7.11s
python: /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/tU1iWraA1-Lxdb3li95-Y/bin/python
libpython: /data/gannet/ripley/.cache/R/reticulate/uv/python/cpython-3.12.13-linux-x86_64-gnu/lib/libpython3.12.so
pythonhome: /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/tU1iWraA1-Lxdb3li95-Y:/data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/tU1iWraA1-Lxdb3li95-Y
virtualenv: /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/tU1iWraA1-Lxdb3li95-Y/bin/activate_this.py
version: 3.12.13 (main, Apr 14 2026, 14:29:00) [Clang 22.1.3 ]
numpy: /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/tU1iWraA1-Lxdb3li95-Y/lib/python3.12/site-packages/numpy
numpy_version: 2.4.4
NOTE: Python version was forced by py_require()
Module(markitdown)
[1] 0
*** caught segfault ***
address 0x14, cause 'memory not mapped'
Traceback:
1: rapi_prepare(conn, query, env)
2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }})
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]])
7: rlang::try_fetch(rapi_prepare(conn, query, env), error = function(e) { rethrow_error_from_rapi(e, call)})
8: rethrow_rapi_prepare(conn@conn_ref, statement, env)
9: .local(conn, statement, ...)
10: dbSendQuery(conn, statement, ...)
11: dbSendQuery(conn, statement, ...)
12: dbSendStatement(conn, statement, ...)
13: dbSendStatement(conn, statement, ...)
14: DBI::dbExecute(con, "LOAD fts; LOAD vss;")
15: DBI::dbExecute(con, "LOAD fts; LOAD vss;")
An irrecoverable exception occurred. R is aborting now ...
NULL
** libs
using C compiler: ‘clang version 22.1.4 (https://github.com/llvm/llvm-project 35990504507d79e0b9deb809c8ee5e1b34ceef20)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src'
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c chunk.c -o chunk.o
clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o ragnar.so chunk.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src'
installing to /data/gannet/ripley/R/packages/tests-clang/ragnar.Rcheck/00LOCK-ragnar/00new/ragnar/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ragnar)