* installing *source* package ‘ragnar’ ...
** this is package ‘ragnar’ version ‘0.2.1’
** package ‘ragnar’ successfully unpacked and MD5 sums checked
** using staged installation
Downloading cpython-3.12.12-linux-x86_64-gnu (download) (31.6MiB)
 Downloaded cpython-3.12.12-linux-x86_64-gnu (download)
Downloading numpy (15.8MiB)
Downloading youtube-transcript-api (2.1MiB)
Downloading pandas (11.8MiB)
Downloading pdfminer-six (5.4MiB)
Downloading speechrecognition (31.3MiB)
Downloading sympy (6.0MiB)
Downloading cryptography (4.3MiB)
Downloading pillow (6.7MiB)
Downloading lxml (5.0MiB)
Downloading magika (14.7MiB)
Downloading onnxruntime (16.6MiB)
 Downloaded youtube-transcript-api
 Downloaded pdfminer-six
 Downloaded cryptography
 Downloaded pillow
 Downloaded lxml
 Downloaded magika
 Downloaded numpy
 Downloaded speechrecognition
 Downloaded onnxruntime
 Downloaded sympy
 Downloaded pandas
Installed 52 packages in 291ms
python:         /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/XCLl11eS4xVXdVn2nT_Oy/bin/python
libpython:      /data/gannet/ripley/.cache/R/reticulate/uv/python/cpython-3.12.12-linux-x86_64-gnu/lib/libpython3.12.so
pythonhome:     /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/XCLl11eS4xVXdVn2nT_Oy:/data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/XCLl11eS4xVXdVn2nT_Oy
virtualenv:     /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/XCLl11eS4xVXdVn2nT_Oy/bin/activate_this.py
version:        3.12.12 (main, Nov 19 2025, 22:46:53) [Clang 21.1.4 ]
numpy:          /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/XCLl11eS4xVXdVn2nT_Oy/lib/python3.12/site-packages/numpy
numpy_version:  2.3.5

NOTE: Python version was forced by py_require()
Module(markitdown)
[1] 0

 *** caught segfault ***
address (nil), cause 'unknown'

Traceback:
 1: rapi_prepare(conn, query, env)
 2: withCallingHandlers(expr, condition = function(cnd) {    {        .__handler_frame__. <- TRUE        .__setup_frame__. <- frame        if (inherits(cnd, "message")) {            except <- c("warning", "error")        }        else if (inherits(cnd, "warning")) {            except <- "error"        }        else {            except <- ""        }    }    while (!is_null(cnd)) {        if (inherits(cnd, "error")) {            out <- handlers[[1L]](cnd)            if (!inherits(out, "rlang_zap"))                 throw(out)        }        inherit <- .subset2(.subset2(cnd, "rlang"), "inherit")        if (is_false(inherit)) {            return()        }        cnd <- .subset2(cnd, "parent")    }})
 3: doTryCatch(return(expr), name, parentenv, handler)
 4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5: tryCatchList(expr, classes, parentenv, handlers)
 6: tryCatch(withCallingHandlers(expr, condition = function(cnd) {    {        .__handler_frame__. <- TRUE        .__setup_frame__. <- frame        if (inherits(cnd, "message")) {            except <- c("warning", "error")        }        else if (inherits(cnd, "warning")) {            except <- "error"        }        else {            except <- ""        }    }    while (!is_null(cnd)) {        if (inherits(cnd, "error")) {            out <- handlers[[1L]](cnd)            if (!inherits(out, "rlang_zap"))                 throw(out)        }        inherit <- .subset2(.subset2(cnd, "rlang"), "inherit")        if (is_false(inherit)) {            return()        }        cnd <- .subset2(cnd, "parent")    }}), stackOverflowError = handlers[[1L]])
 7: rlang::try_fetch(rapi_prepare(conn, query, env), error = function(e) {    rethrow_error_from_rapi(e, call)})
 8: rethrow_rapi_prepare(conn@conn_ref, statement, env)
 9: .local(conn, statement, ...)
10: dbSendQuery(conn, statement, ...)
11: dbSendQuery(conn, statement, ...)
12: dbSendStatement(conn, statement, ...)
13: dbSendStatement(conn, statement, ...)
14: DBI::dbExecute(con, "LOAD fts; LOAD vss;")
15: DBI::dbExecute(con, "LOAD fts; LOAD vss;")
An irrecoverable exception occurred. R is aborting now ...
NULL
** libs
using C compiler: ‘clang version 21.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src'
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c chunk.c -o chunk.o
/usr/local/clang21/bin/clang -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o ragnar.so chunk.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src'
installing to /data/gannet/ripley/R/packages/tests-clang/ragnar.Rcheck/00LOCK-ragnar/00new/ragnar/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ragnar)