* installing *source* package ‘ragnar’ ... ** this is package ‘ragnar’ version ‘0.2.1’ ** package ‘ragnar’ successfully unpacked and MD5 sums checked ** using staged installation python: /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/xd_o2B_Ysat8s5-nQH0ae/bin/python3 libpython: /data/gannet/ripley/.cache/R/reticulate/uv/python/cpython-3.11.13-linux-x86_64-gnu/lib/libpython3.11.so pythonhome: /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/xd_o2B_Ysat8s5-nQH0ae:/data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/xd_o2B_Ysat8s5-nQH0ae virtualenv: /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/xd_o2B_Ysat8s5-nQH0ae/bin/activate_this.py version: 3.11.13 (main, Jul 11 2025, 22:43:55) [Clang 20.1.4 ] numpy: /data/gannet/ripley/.cache/R/reticulate/uv/cache/archive-v0/xd_o2B_Ysat8s5-nQH0ae/lib/python3.11/site-packages/numpy numpy_version: 2.3.2 NOTE: Python version was forced by py_require() Module(markitdown) [1] 0 *** caught segfault *** address 0x501000106, cause 'memory not mapped' Traceback: 1: rapi_prepare(conn, query, env) 2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}) 3: doTryCatch(return(expr), name, parentenv, handler) 4: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5: tryCatchList(expr, classes, parentenv, handlers) 6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]]) 7: rlang::try_fetch(rapi_prepare(conn, query, env), error = function(e) { rethrow_error_from_rapi(e, call)}) 8: rethrow_rapi_prepare(conn@conn_ref, statement, env) 9: .local(conn, statement, ...) 10: dbSendQuery(conn, statement, ...) 11: dbSendQuery(conn, statement, ...) 12: dbSendStatement(conn, statement, ...) 13: dbSendStatement(conn, statement, ...) 14: DBI::dbExecute(con, "LOAD fts; LOAD vss;") 15: DBI::dbExecute(con, "LOAD fts; LOAD vss;") An irrecoverable exception occurred. R is aborting now ... NULL ** libs using C compiler: ‘clang version 21.1.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src' /usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c chunk.c -o chunk.o /usr/local/clang21/bin/clang -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o ragnar.so chunk.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ragnar/src' installing to /data/gannet/ripley/R/packages/tests-clang/ragnar.Rcheck/00LOCK-ragnar/00new/ragnar/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ragnar)