* installing *source* package ‘rCausalMGM’ ...
** this is package ‘rCausalMGM’ version ‘1.0’
** package ‘rCausalMGM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rCausalMGM/src'
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Bootstrap.cpp -o Bootstrap.o
In file included from Bootstrap.cpp:1:
In file included from inc/Bootstrap.hpp:4:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from Bootstrap.cpp:1:
In file included from inc/Bootstrap.hpp:4:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Boss.cpp -o Boss.o
In file included from Boss.cpp:3:
In file included from inc/Boss.hpp:6:
In file included from inc/DepthChoiceGenerator.hpp:4:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c CensoredVariable.cpp -o CensoredVariable.o
In file included from CensoredVariable.cpp:1:
In file included from inc/CensoredVariable.hpp:15:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
CensoredVariable.cpp:5:5: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result]
    5 |     stod(val);
      |     ^~~~~~~~~
2 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c ChoiceGenerator.cpp -o ChoiceGenerator.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c ContinuousVariable.cpp -o ContinuousVariable.o
In file included from ChoiceGenerator.cpp:1:
In file included from inc/ChoiceGenerator.hpp:4:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c CoxIRLSRegression.cpp -o CoxIRLSRegression.o
In file included from CoxIRLSRegression.cpp:1:
In file included from inc/CoxIRLSRegression.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from ContinuousVariable.cpp:1:
In file included from inc/ContinuousVariable.hpp:13:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
ContinuousVariable.cpp:5:2: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result]
    5 |         stod(val);
      |         ^~~~~~~~~
2 warnings generated.
In file included from CoxIRLSRegression.cpp:1:
In file included from inc/CoxIRLSRegression.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c CoxMGM.cpp -o CoxMGM.o
In file included from CoxMGM.cpp:1:
In file included from inc/CoxMGM.hpp:7:
In file included from inc/ConvexProximal.hpp:15:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from CoxMGM.cpp:1:
In file included from inc/CoxMGM.hpp:7:
In file included from inc/ConvexProximal.hpp:15:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c CoxMGMParams.cpp -o CoxMGMParams.o
In file included from CoxMGMParams.cpp:1:
In file included from inc/CoxMGMParams.hpp:4:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c CoxRegression.cpp -o CoxRegression.o
In file included from CoxRegression.cpp:1:
In file included from inc/CoxRegression.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from CoxRegression.cpp:1:
In file included from inc/CoxRegression.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c CoxRegressionResult.cpp -o CoxRegressionResult.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c DataSet.cpp -o DataSet.o
In file included from DataSet.cpp:1:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from CoxRegressionResult.cpp:1:
In file included from inc/CoxRegressionResult.hpp:4:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
1 warning generated.
In file included from DataSet.cpp:1:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c DegenerateGaussianScore.cpp -o DegenerateGaussianScore.o
In file included from DegenerateGaussianScore.cpp:3:
In file included from inc/DegenerateGaussianScore.hpp:4:
In file included from inc/Score.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from DegenerateGaussianScore.cpp:3:
In file included from inc/DegenerateGaussianScore.hpp:4:
In file included from inc/Score.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c DepthChoiceGenerator.cpp -o DepthChoiceGenerator.o
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c DiscreteVariable.cpp -o DiscreteVariable.o
In file included from DiscreteVariable.cpp:1:
In file included from inc/DiscreteVariable.hpp:13:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from DepthChoiceGenerator.cpp:1:
In file included from inc/DepthChoiceGenerator.hpp:4:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
1 warning generated.
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Edge.cpp -o Edge.o
In file included from Edge.cpp:1:
In file included from inc/Edge.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c EdgeListGraph.cpp -o EdgeListGraph.o
In file included from EdgeListGraph.cpp:1:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from Edge.cpp:1:
In file included from inc/Edge.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c FasStableProducerConsumer.cpp -o FasStableProducerConsumer.o
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Fci.cpp -o Fci.o
In file included from EdgeListGraph.cpp:1:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from FasStableProducerConsumer.cpp:1:
In file included from inc/FasStableProducerConsumer.hpp:6:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from Fci.cpp:1:
In file included from inc/Fci.hpp:20:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from FasStableProducerConsumer.cpp:1:
In file included from inc/FasStableProducerConsumer.hpp:6:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from Fci.cpp:1:
In file included from inc/Fci.hpp:20:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c FciOrient.cpp -o FciOrient.o
3 warnings generated.
In file included from FciOrient.cpp:1:
In file included from inc/FciOrient.hpp:23:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from FciOrient.cpp:1:
In file included from inc/FciOrient.hpp:23:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c GraphUtils.cpp -o GraphUtils.o
In file included from GraphUtils.cpp:2:
In file included from inc/GraphUtils.hpp:8:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from GraphUtils.cpp:2:
In file included from inc/GraphUtils.hpp:8:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Grasp.cpp -o Grasp.o
In file included from Grasp.cpp:3:
In file included from inc/Grasp.hpp:7:
In file included from inc/GrowShrinkTree.hpp:5:
In file included from inc/Score.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from Grasp.cpp:3:
In file included from inc/Grasp.hpp:7:
In file included from inc/GrowShrinkTree.hpp:5:
In file included from inc/Score.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c GrowShrink.cpp -o GrowShrink.o
In file included from GrowShrink.cpp:1:
In file included from inc/GrowShrink.hpp:4:
In file included from inc/Score.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from GrowShrink.cpp:1:
In file included from inc/GrowShrink.hpp:4:
In file included from inc/Score.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c GrowShrinkTree.cpp -o GrowShrinkTree.o
In file included from GrowShrinkTree.cpp:1:
In file included from inc/GrowShrinkTree.hpp:5:
In file included from inc/Score.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c IndTestMulti.cpp -o IndTestMulti.o
In file included from IndTestMulti.cpp:1:
In file included from inc/IndTestMulti.hpp:4:
In file included from inc/IndependenceTest.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from GrowShrinkTree.cpp:1:
In file included from inc/GrowShrinkTree.hpp:5:
In file included from inc/Score.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c IndTestMultiCox.cpp -o IndTestMultiCox.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Knowledge.cpp -o Knowledge.o
3 warnings generated.
In file included from IndTestMultiCox.cpp:1:
In file included from inc/IndTestMultiCox.hpp:4:
In file included from inc/IndependenceTest.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from IndTestMulti.cpp:1:
In file included from inc/IndTestMulti.hpp:4:
In file included from inc/IndependenceTest.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from Knowledge.cpp:1:
In file included from inc/Knowledge.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
3 warnings generated.
In file included from IndTestMultiCox.cpp:1:
In file included from inc/IndTestMultiCox.hpp:4:
In file included from inc/IndependenceTest.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from Knowledge.cpp:1:
In file included from inc/Knowledge.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c LinearRegression.cpp -o LinearRegression.o
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c LogisticRegression.cpp -o LogisticRegression.o
In file included from LinearRegression.cpp:1:
In file included from inc/LinearRegression.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from LogisticRegression.cpp:1:
In file included from inc/LogisticRegression.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from LogisticRegression.cpp:1:
In file included from inc/LogisticRegression.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from LinearRegression.cpp:1:
In file included from inc/LinearRegression.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c LogisticRegressionResult.cpp -o LogisticRegressionResult.o
3 warnings generated.
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c MGM.cpp -o MGM.o
In file included from MGM.cpp:1:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from LogisticRegressionResult.cpp:1:
In file included from inc/LogisticRegressionResult.hpp:4:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c MGMParams.cpp -o MGMParams.o
In file included from MGM.cpp:1:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from MGMParams.cpp:1:
In file included from inc/MGMParams.hpp:4:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
1 warning generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c MeekRules.cpp -o MeekRules.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Node.cpp -o Node.o
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c PcStable.cpp -o PcStable.o
In file included from MeekRules.cpp:1:
In file included from inc/MeekRules.hpp:4:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from Node.cpp:1:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from PcStable.cpp:1:
In file included from inc/PcStable.hpp:4:
In file included from inc/IndependenceTest.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from MeekRules.cpp:1:
In file included from inc/MeekRules.hpp:4:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from Node.cpp:1:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c PossibleDsepFciConsumerProducer.cpp -o PossibleDsepFciConsumerProducer.o
In file included from PcStable.cpp:1:
In file included from inc/PcStable.hpp:4:
In file included from inc/IndependenceTest.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from PossibleDsepFciConsumerProducer.cpp:1:
In file included from inc/PossibleDsepFciConsumerProducer.hpp:18:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c ProximalGradient.cpp -o ProximalGradient.o
3 warnings generated.
In file included from ProximalGradient.cpp:1:
In file included from inc/ProximalGradient.hpp:7:
In file included from inc/ConvexProximal.hpp:15:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from PossibleDsepFciConsumerProducer.cpp:1:
In file included from inc/PossibleDsepFciConsumerProducer.hpp:18:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
In file included from ProximalGradient.cpp:1:
In file included from inc/ProximalGradient.hpp:7:
In file included from inc/ConvexProximal.hpp:15:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RegressionBicScore.cpp -o RegressionBicScore.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RegressionResult.cpp -o RegressionResult.o
In file included from RegressionBicScore.cpp:3:
In file included from inc/RegressionBicScore.hpp:4:
In file included from inc/Score.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from RegressionBicScore.cpp:3:
In file included from inc/RegressionBicScore.hpp:4:
In file included from inc/Score.hpp:4:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from RegressionResult.cpp:1:
In file included from inc/RegressionResult.hpp:4:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
1 warning generated.
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c STARS.cpp -o STARS.o
In file included from STARS.cpp:1:
In file included from inc/STARS.hpp:4:
In file included from inc/StabilityUtils.hpp:6:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from STARS.cpp:1:
In file included from inc/STARS.hpp:4:
In file included from inc/StabilityUtils.hpp:6:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c STEPS.cpp -o STEPS.o
In file included from STEPS.cpp:1:
In file included from inc/STEPS.hpp:4:
In file included from inc/StabilityUtils.hpp:6:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from STEPS.cpp:1:
In file included from inc/STEPS.hpp:4:
In file included from inc/StabilityUtils.hpp:6:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c SearchCV.cpp -o SearchCV.o
In file included from SearchCV.cpp:3:
In file included from inc/SearchCV.hpp:5:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from SearchCV.cpp:3:
In file included from inc/SearchCV.hpp:5:
In file included from inc/DataSet.hpp:15:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c SearchGraphUtils.cpp -o SearchGraphUtils.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c SearchWrappers.cpp -o SearchWrappers.o
In file included from SearchGraphUtils.cpp:1:
In file included from inc/SearchGraphUtils.hpp:4:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from SearchWrappers.cpp:1:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from SearchGraphUtils.cpp:1:
In file included from inc/SearchGraphUtils.hpp:4:
In file included from inc/EdgeListGraph.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from SearchWrappers.cpp:1:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
3 warnings generated.
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c SepsetMap.cpp -o SepsetMap.o
In file included from SepsetMap.cpp:1:
In file included from inc/SepsetMap.hpp:7:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from SepsetMap.cpp:1:
In file included from inc/SepsetMap.hpp:7:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c SepsetProducer.cpp -o SepsetProducer.o
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c StabilityUtils.cpp -o StabilityUtils.o
3 warnings generated.
In file included from SepsetProducer.cpp:1:
In file included from inc/SepsetProducer.hpp:6:
In file included from inc/Triple.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from StabilityUtils.cpp:1:
In file included from inc/StabilityUtils.hpp:6:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include   -I"inc" -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c Triple.cpp -o Triple.o
In file included from SepsetProducer.cpp:1:
In file included from inc/SepsetProducer.hpp:6:
In file included from inc/Triple.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from Triple.cpp:1:
In file included from inc/Triple.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
In file included from inc/armaLapack.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:29:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   27 |     #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
   35 |     #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
      |             ^
In file included from StabilityUtils.cpp:1:
In file included from inc/StabilityUtils.hpp:6:
In file included from inc/MGM.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from Triple.cpp:1:
In file included from inc/Triple.hpp:4:
In file included from inc/Node.hpp:18:
In file included from inc/Variable.hpp:17:
inc/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
3 warnings generated.
3 warnings generated.
3 warnings generated.
clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o rCausalMGM.so Bootstrap.o Boss.o CensoredVariable.o ChoiceGenerator.o ContinuousVariable.o CoxIRLSRegression.o CoxMGM.o CoxMGMParams.o CoxRegression.o CoxRegressionResult.o DataSet.o DegenerateGaussianScore.o DepthChoiceGenerator.o DiscreteVariable.o Edge.o EdgeListGraph.o FasStableProducerConsumer.o Fci.o FciOrient.o GraphUtils.o Grasp.o GrowShrink.o GrowShrinkTree.o IndTestMulti.o IndTestMultiCox.o Knowledge.o LinearRegression.o LogisticRegression.o LogisticRegressionResult.o MGM.o MGMParams.o MeekRules.o Node.o PcStable.o PossibleDsepFciConsumerProducer.o ProximalGradient.o RcppExports.o RegressionBicScore.o RegressionResult.o STARS.o STEPS.o SearchCV.o SearchGraphUtils.o SearchWrappers.o SepsetMap.o SepsetProducer.o StabilityUtils.o Triple.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rCausalMGM/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rCausalMGM/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rCausalMGM/src'
installing to /data/gannet/ripley/R/packages/tests-clang/rCausalMGM.Rcheck/00LOCK-rCausalMGM/00new/rCausalMGM/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rCausalMGM)