* installing *source* package ‘r2sbml’ ...
** this is package ‘r2sbml’ version ‘0.1.0’
** package ‘r2sbml’ successfully unpacked and MD5 sums checked
** using staged installation
'config' variable 'CXX11FLAGS' is defunct
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /usr/local/clang23/bin/clang++ -std=gnu++20 accepts -g... yes
checking for /usr/local/clang23/bin/clang++ -std=gnu++20 option to enable C++11 features... -std=gnu++11
checking how to run the C++ preprocessor... /usr/local/clang23/bin/clang++ -std=gnu++20 -std=gnu++11 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether /usr/local/clang23/bin/clang++ -std=gnu++20 -std=gnu++11 accepts -g... (cached) yes
checking for /usr/local/clang23/bin/clang++ -std=gnu++20 -std=gnu++11 option to enable C++11 features... (cached) -std=gnu++11
checking for pkg-config... yes
checking for cmake... /usr/sbin/cmake
set CMAKE_BIN=/usr/sbin/cmake
Extracting bundled libsbml-5.21.0 source...
set CC=/usr/local/clang23/bin/clang-23 -std=gnu23
set CC_LAUNCHER=
set CFLAGS=-isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3
set CXX_LAUNCHER=
set CXX=/usr/local/clang23/bin/clang++
set CXXFLAGS=-std=gnu++20 -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw
set LDFLAGS=-L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64
-- The C compiler identification is Clang 23.1.4
-- The CXX compiler identification is Clang 23.1.4
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/clang23/bin/clang-23 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/clang23/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/local/clang23/bin/clang-23 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Found SWIG: /usr/sbin/swig (found version "4.4.1")
-- Found PkgConfig: /usr/sbin/pkg-config (found version "2.5.1")
-- Looking for gzopen in /lib64/libz.so
-- Looking for gzopen in /lib64/libz.so - found
-- Looking for sin in m
-- Looking for sin in m - found
-- Performing Test LIBXML_LIBXML_TEST
-- Performing Test LIBXML_LIBXML_TEST - Success
-- LIBXML_LIBXML_TEST = 1
-- Found LIBXML: /usr/lib64/libxml2.so (found version "2.12.10")
-- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so
-- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found
-- Found BZ2: /usr/lib64/libbz2.so (found version "1.0.8")
-- Found ZLIB: /lib64/libz.so (found version "1.3.1.zlib-ng")
-- Looking for include file check.h
-- Looking for include file check.h - found
-- Looking for include file expat.h
-- Looking for include file expat.h - found
-- Looking for include file errno.h
-- Looking for include file errno.h - found
-- Looking for include file ieeefp.h
-- Looking for include file ieeefp.h - not found
-- Looking for include file math.h
-- Looking for include file math.h - found
-- Looking for include file sys/types.h
-- Looking for include file sys/types.h - found
-- Looking for include file float.h
-- Looking for include file float.h - found
-- Looking for sqrt in m
-- Looking for sqrt in m - found
--
----------------------------------------------------------------------
libSBML version 5.21.0
----------------------------------------------------------------------
More information and the latest version are available online at
https://sbml.org/software/libsbml/
Please report problems using the issue tracker at
https://github.com/sbmlteam/libsbml/issues
To contact the developers directly, email libsbml-team@googlegroups.com
Configured on host 'gannet2.stats.ox.ac.uk'
host type = Linux
host operating system = Linux 7.2.14-200.fc44.x86_64
host CPU architecture = x86_64
General build flags:
CC = /usr/local/clang23/bin/clang-23
CXX = /usr/local/clang23/bin/clang++
CPPFLAGS = -DLINUX
CFLAGS = -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -Wno-tautological-constant-out-of-range-compare -Wno-tautological-undefined-compare -Wno-switch -Wno-deprecated-non-prototype -Wno-strict-prototypes -std=gnu17 -fno-strict-aliasing -fPIC
CXXFLAGS = -std=gnu++20 -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -Wno-tautological-constant-out-of-range-compare -Wno-tautological-undefined-compare -Wno-switch -Wno-overloaded-virtual -fno-strict-aliasing -fPIC
LDFLAGS = -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64
XML parser library configuration:
XML library = libxml2
CPPFLAGS for XML = -I/usr/include/libxml2
LIBS for XML = /usr/lib64/libxml2.so
Other libSBML configuration settings:
Installation $prefix = /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install
-- Value of $LD_LIBRARY_PATH = /data/localhost/ripley/R/R-clang/lib:/usr/local/clang/lib64:/usr/local/clang23/lib:/usr/local/clang23/lib/x86_64-unknown-linux-gnu:/usr/local/lib64:/usr/lib/jvm/java-25/lib/server:/data/localhost/ripley/R/R-clang/lib:/usr/local/clang/lib64:/usr/local/clang23/lib:/usr/local/clang23/lib/x86_64-unknown-linux-gnu:/usr/local/lib64:/usr/lib/jvm/java-25/lib/server:/data/localhost/ripley/R/R-clang/lib:/usr/local/clang/lib64:/usr/local/clang23/lib:/usr/local/clang23/lib/x86_64-unknown-linux-gnu:/usr/local/lib64:/usr/lib/jvm/java-25/lib/server:/data/localhost/ripley/R/R-clang/lib:/usr/local/clang/lib64:/usr/local/clang23/lib:/usr/local/clang23/lib/x86_64-unknown-linux-gnu:/usr/local/lib64:/usr/lib/jvm/java-25/lib/server::/usr/lib64/openmpi/lib
-- Using SWIG = /usr/sbin/swig (Version 4.4.1)
-- Using C++ namespace ('libsbml') = no
--
-- Build examples = no
--
--
-- Support for SBML Level 3 Packages:
-- SBML 'arrays' package = OFF
-- SBML 'comp' package = OFF
-- SBML 'distrib' package = OFF
-- SBML 'dyn' package = OFF
-- SBML 'fbc' package = OFF
-- SBML 'groups' package = OFF
-- SBML 'l3v2extendedmath' package = ON
-- SBML 'layout' package = OFF
-- SBML 'multi' package = OFF
-- SBML 'qual' package = OFF
-- SBML 'render' package = OFF
-- SBML 'req' package = OFF
-- SBML 'spatial' package = OFF
--
-- Other potentially important settings:
-- Compression support is enabled for .zip and .gz files
-- Compression support is enabled for .bz2 files
--
----------------------------------------------------------------------
-- Configuring done (2.4s)
-- Generating done (0.1s)
CMake Warning:
Manually-specified variables were not used by the project:
BUILD_TESTING
-- Build files have been written to: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-build
gmake[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-build'
[ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o
[ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o
[ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o
[ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o
[ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o
[ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o
[ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o
[ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o
[ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o
[ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o
[ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o
[ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o
[ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o
[ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o
[ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o
[ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o
[ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o
[ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o
[ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o
[ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ExpressionAnalyser.cpp.o
[ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:83:7: warning: initializer order does not match the declaration order [-Wreorder-ctor]
83 | : mModel (NULL),
| ^~~~~~~~~~~~~
| mODEs ()
84 | mODEs (),
| ~~~~~~~~
| mModel (NULL)
85 | mNewVarName("newVar"),
| ~~~~~~~~~~~~~~~~~~~~~
| mHiddenSpecies (NULL)
86 | mNewVarCount(1),
| ~~~~~~~~~~~~~~~
| mHiddenNodes (NULL)
87 | mHiddenSpecies (NULL),
| ~~~~~~~~~~~~~~~~~~~~~
| mNewVarName("newVar")
88 | mHiddenNodes (NULL)
| ~~~~~~~~~~~~~~~~~~~
| mNewVarCount(1)
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:83:7: note: field 'mModel' will be initialized after field 'mODEs'
83 | : mModel (NULL),
| ^~~~~~~~~~~~~
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:86:5: note: field 'mNewVarCount' will be initialized after field 'mHiddenSpecies'
86 | mNewVarCount(1),
| ^~~~~~~~~~~~~~~
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:97:5: warning: field 'mNewVarCount' will be initialized after field 'mHiddenSpecies' [-Wreorder-ctor]
96 | mNewVarName("newVar"),
| ~~~~~~~~~~~~~~~~~~~~~
| mHiddenSpecies(NULL)
97 | mNewVarCount(1),
| ^~~~~~~~~~~~~~~
| mHiddenNodes(NULL)
98 | mHiddenSpecies(NULL),
| ~~~~~~~~~~~~~~~~~~~~
| mNewVarName("newVar")
99 | mHiddenNodes(NULL)
| ~~~~~~~~~~~~~~~~~~
| mNewVarCount(1)
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:108:3: warning: initializer order does not match the declaration order [-Wreorder-ctor]
108 | mModel( orig.mModel),
| ^~~~~~~~~~~~~~~~~~~~
| mODEs(orig.mODEs)
109 | mODEs(orig.mODEs),
| ~~~~~~~~~~~~~~~~~
| mModel( orig.mModel)
110 | mNewVarName(orig.mNewVarName),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| mHiddenSpecies(orig.mHiddenSpecies)
111 | mNewVarCount(orig.mNewVarCount),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| mHiddenNodes(orig.mHiddenNodes)
112 | mHiddenSpecies(orig.mHiddenSpecies),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| mNewVarName(orig.mNewVarName)
113 | mHiddenNodes(orig.mHiddenNodes)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| mNewVarCount(orig.mNewVarCount)
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:108:3: note: field 'mModel' will be initialized after field 'mODEs'
108 | mModel( orig.mModel),
| ^~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:111:5: note: field 'mNewVarCount' will be initialized after field 'mHiddenSpecies'
111 | mNewVarCount(orig.mNewVarCount),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3 warnings generated.
[ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o
[ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o
[ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o
[ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o
[ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o
[ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o
[ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o
[ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o
[ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o
[ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o
[ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o
[ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/conversion/SBMLRateRuleConverter.cpp:64:18: warning: unused variable 'term' [-Wunused-variable]
64 | ASTNode* term = co.at(n).first;
| ^~~~
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/conversion/SBMLRateRuleConverter.cpp:59:13: warning: unused function 'print_vectors' [-Wunused-function]
59 | static void print_vectors(setCoeff co)
| ^~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o
2 warnings generated.
[ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o
[ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o
[ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/extension/ASTBasePlugin.cpp:320:5: warning: field 'mExtendedMathType' will be initialized after field 'mPkgASTNodeValues' [-Wreorder-ctor]
320 | , mExtendedMathType(orig.mExtendedMathType)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| mPkgASTNodeValues(orig.mPkgASTNodeValues)
321 | , mPkgASTNodeValues(orig.mPkgASTNodeValues)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| mExtendedMathType(orig.mExtendedMathType)
[ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o
1 warning generated.
[ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o
[ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o
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[ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o
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/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/SBase.cpp:1398:8: warning: variable 'hasNestedTerms' set but not used [-Wunused-but-set-variable]
1398 | bool hasNestedTerms = false;
| ^
[ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o
1 warning generated.
[ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o
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[ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/html2md/table.cpp.o
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:598:20: warning: '&&' within '||' [-Wlogical-op-parentheses]
597 | if (current_tag_ == kTagParagraph ||
| ~~
598 | is_in_table_ && (prev_tag_ != kTagCode && prev_tag_ != kTagPre))
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:598:20: note: place parentheses around the '&&' expression to silence this warning
598 | is_in_table_ && (prev_tag_ != kTagCode && prev_tag_ != kTagPre))
| ^
| ( )
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:4:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.h:7:
In file included from /usr/local/clang23/bin/../include/c++/v1/memory:946:
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagIgnored' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagIgnored>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagIgnored>>::destroy<html2md::Converter::TagIgnored, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagIgnored, std::allocator<html2md::Converter::TagIgnored>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagIgnored, std::allocator<html2md::Converter::TagIgnored>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagIgnored, std::allocator<html2md::Converter::TagIgnored>>, html2md::Converter::TagIgnored, std::allocator<html2md::Converter::TagIgnored>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagIgnored, std::allocator<html2md::Converter::TagIgnored>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:100:21: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagIgnored, 0>' requested here
100 | auto tagIgnored = make_shared<Converter::TagIgnored>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagAnchor' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagAnchor>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagAnchor>>::destroy<html2md::Converter::TagAnchor, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagAnchor, std::allocator<html2md::Converter::TagAnchor>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagAnchor, std::allocator<html2md::Converter::TagAnchor>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagAnchor, std::allocator<html2md::Converter::TagAnchor>>, html2md::Converter::TagAnchor, std::allocator<html2md::Converter::TagAnchor>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagAnchor, std::allocator<html2md::Converter::TagAnchor>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:110:23: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagAnchor, 0>' requested here
110 | tags_[kTagAnchor] = make_shared<Converter::TagAnchor>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagBreak' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagBreak>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagBreak>>::destroy<html2md::Converter::TagBreak, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagBreak, std::allocator<html2md::Converter::TagBreak>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagBreak, std::allocator<html2md::Converter::TagBreak>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagBreak, std::allocator<html2md::Converter::TagBreak>>, html2md::Converter::TagBreak, std::allocator<html2md::Converter::TagBreak>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagBreak, std::allocator<html2md::Converter::TagBreak>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:111:22: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagBreak, 0>' requested here
111 | tags_[kTagBreak] = make_shared<Converter::TagBreak>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagDiv' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagDiv>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagDiv>>::destroy<html2md::Converter::TagDiv, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagDiv, std::allocator<html2md::Converter::TagDiv>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagDiv, std::allocator<html2md::Converter::TagDiv>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagDiv, std::allocator<html2md::Converter::TagDiv>>, html2md::Converter::TagDiv, std::allocator<html2md::Converter::TagDiv>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagDiv, std::allocator<html2md::Converter::TagDiv>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:112:20: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagDiv, 0>' requested here
112 | tags_[kTagDiv] = make_shared<Converter::TagDiv>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagHeader1' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagHeader1>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagHeader1>>::destroy<html2md::Converter::TagHeader1, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader1, std::allocator<html2md::Converter::TagHeader1>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagHeader1, std::allocator<html2md::Converter::TagHeader1>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagHeader1, std::allocator<html2md::Converter::TagHeader1>>, html2md::Converter::TagHeader1, std::allocator<html2md::Converter::TagHeader1>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagHeader1, std::allocator<html2md::Converter::TagHeader1>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:113:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader1, 0>' requested here
113 | tags_[kTagHeader1] = make_shared<Converter::TagHeader1>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagHeader2' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagHeader2>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagHeader2>>::destroy<html2md::Converter::TagHeader2, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader2, std::allocator<html2md::Converter::TagHeader2>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagHeader2, std::allocator<html2md::Converter::TagHeader2>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagHeader2, std::allocator<html2md::Converter::TagHeader2>>, html2md::Converter::TagHeader2, std::allocator<html2md::Converter::TagHeader2>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagHeader2, std::allocator<html2md::Converter::TagHeader2>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:114:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader2, 0>' requested here
114 | tags_[kTagHeader2] = make_shared<Converter::TagHeader2>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagHeader3' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagHeader3>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagHeader3>>::destroy<html2md::Converter::TagHeader3, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader3, std::allocator<html2md::Converter::TagHeader3>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagHeader3, std::allocator<html2md::Converter::TagHeader3>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagHeader3, std::allocator<html2md::Converter::TagHeader3>>, html2md::Converter::TagHeader3, std::allocator<html2md::Converter::TagHeader3>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagHeader3, std::allocator<html2md::Converter::TagHeader3>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:115:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader3, 0>' requested here
115 | tags_[kTagHeader3] = make_shared<Converter::TagHeader3>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagHeader4' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagHeader4>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagHeader4>>::destroy<html2md::Converter::TagHeader4, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader4, std::allocator<html2md::Converter::TagHeader4>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagHeader4, std::allocator<html2md::Converter::TagHeader4>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagHeader4, std::allocator<html2md::Converter::TagHeader4>>, html2md::Converter::TagHeader4, std::allocator<html2md::Converter::TagHeader4>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagHeader4, std::allocator<html2md::Converter::TagHeader4>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:116:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader4, 0>' requested here
116 | tags_[kTagHeader4] = make_shared<Converter::TagHeader4>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagHeader5' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagHeader5>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagHeader5>>::destroy<html2md::Converter::TagHeader5, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader5, std::allocator<html2md::Converter::TagHeader5>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagHeader5, std::allocator<html2md::Converter::TagHeader5>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagHeader5, std::allocator<html2md::Converter::TagHeader5>>, html2md::Converter::TagHeader5, std::allocator<html2md::Converter::TagHeader5>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagHeader5, std::allocator<html2md::Converter::TagHeader5>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:117:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader5, 0>' requested here
117 | tags_[kTagHeader5] = make_shared<Converter::TagHeader5>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagHeader6' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagHeader6>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagHeader6>>::destroy<html2md::Converter::TagHeader6, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader6, std::allocator<html2md::Converter::TagHeader6>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagHeader6, std::allocator<html2md::Converter::TagHeader6>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagHeader6, std::allocator<html2md::Converter::TagHeader6>>, html2md::Converter::TagHeader6, std::allocator<html2md::Converter::TagHeader6>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagHeader6, std::allocator<html2md::Converter::TagHeader6>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:118:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader6, 0>' requested here
118 | tags_[kTagHeader6] = make_shared<Converter::TagHeader6>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagListItem' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagListItem>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagListItem>>::destroy<html2md::Converter::TagListItem, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagListItem, std::allocator<html2md::Converter::TagListItem>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagListItem, std::allocator<html2md::Converter::TagListItem>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagListItem, std::allocator<html2md::Converter::TagListItem>>, html2md::Converter::TagListItem, std::allocator<html2md::Converter::TagListItem>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagListItem, std::allocator<html2md::Converter::TagListItem>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:119:25: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagListItem, 0>' requested here
119 | tags_[kTagListItem] = make_shared<Converter::TagListItem>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagOption' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagOption>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagOption>>::destroy<html2md::Converter::TagOption, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagOption, std::allocator<html2md::Converter::TagOption>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagOption, std::allocator<html2md::Converter::TagOption>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagOption, std::allocator<html2md::Converter::TagOption>>, html2md::Converter::TagOption, std::allocator<html2md::Converter::TagOption>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagOption, std::allocator<html2md::Converter::TagOption>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:120:23: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagOption, 0>' requested here
120 | tags_[kTagOption] = make_shared<Converter::TagOption>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagOrderedList' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagOrderedList>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagOrderedList>>::destroy<html2md::Converter::TagOrderedList, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagOrderedList, std::allocator<html2md::Converter::TagOrderedList>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagOrderedList, std::allocator<html2md::Converter::TagOrderedList>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagOrderedList, std::allocator<html2md::Converter::TagOrderedList>>, html2md::Converter::TagOrderedList, std::allocator<html2md::Converter::TagOrderedList>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagOrderedList, std::allocator<html2md::Converter::TagOrderedList>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:121:28: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagOrderedList, 0>' requested here
121 | tags_[kTagOrderedList] = make_shared<Converter::TagOrderedList>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagPre' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagPre>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagPre>>::destroy<html2md::Converter::TagPre, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagPre, std::allocator<html2md::Converter::TagPre>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagPre, std::allocator<html2md::Converter::TagPre>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagPre, std::allocator<html2md::Converter::TagPre>>, html2md::Converter::TagPre, std::allocator<html2md::Converter::TagPre>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagPre, std::allocator<html2md::Converter::TagPre>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:122:20: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagPre, 0>' requested here
122 | tags_[kTagPre] = make_shared<Converter::TagPre>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagCode' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagCode>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagCode>>::destroy<html2md::Converter::TagCode, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagCode, std::allocator<html2md::Converter::TagCode>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagCode, std::allocator<html2md::Converter::TagCode>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagCode, std::allocator<html2md::Converter::TagCode>>, html2md::Converter::TagCode, std::allocator<html2md::Converter::TagCode>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagCode, std::allocator<html2md::Converter::TagCode>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:123:21: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagCode, 0>' requested here
123 | tags_[kTagCode] = make_shared<Converter::TagCode>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagParagraph' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagParagraph>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagParagraph>>::destroy<html2md::Converter::TagParagraph, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagParagraph, std::allocator<html2md::Converter::TagParagraph>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagParagraph, std::allocator<html2md::Converter::TagParagraph>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagParagraph, std::allocator<html2md::Converter::TagParagraph>>, html2md::Converter::TagParagraph, std::allocator<html2md::Converter::TagParagraph>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagParagraph, std::allocator<html2md::Converter::TagParagraph>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:124:26: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagParagraph, 0>' requested here
124 | tags_[kTagParagraph] = make_shared<Converter::TagParagraph>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagSpan' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagSpan>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagSpan>>::destroy<html2md::Converter::TagSpan, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagSpan, std::allocator<html2md::Converter::TagSpan>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagSpan, std::allocator<html2md::Converter::TagSpan>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagSpan, std::allocator<html2md::Converter::TagSpan>>, html2md::Converter::TagSpan, std::allocator<html2md::Converter::TagSpan>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagSpan, std::allocator<html2md::Converter::TagSpan>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:125:21: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagSpan, 0>' requested here
125 | tags_[kTagSpan] = make_shared<Converter::TagSpan>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagUnorderedList' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagUnorderedList>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagUnorderedList>>::destroy<html2md::Converter::TagUnorderedList, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagUnorderedList, std::allocator<html2md::Converter::TagUnorderedList>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagUnorderedList, std::allocator<html2md::Converter::TagUnorderedList>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagUnorderedList, std::allocator<html2md::Converter::TagUnorderedList>>, html2md::Converter::TagUnorderedList, std::allocator<html2md::Converter::TagUnorderedList>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagUnorderedList, std::allocator<html2md::Converter::TagUnorderedList>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:126:30: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagUnorderedList, 0>' requested here
126 | tags_[kTagUnorderedList] = make_shared<Converter::TagUnorderedList>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagTitle' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagTitle>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagTitle>>::destroy<html2md::Converter::TagTitle, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTitle, std::allocator<html2md::Converter::TagTitle>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagTitle, std::allocator<html2md::Converter::TagTitle>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagTitle, std::allocator<html2md::Converter::TagTitle>>, html2md::Converter::TagTitle, std::allocator<html2md::Converter::TagTitle>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagTitle, std::allocator<html2md::Converter::TagTitle>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:127:22: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagTitle, 0>' requested here
127 | tags_[kTagTitle] = make_shared<Converter::TagTitle>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagImage' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagImage>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagImage>>::destroy<html2md::Converter::TagImage, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagImage, std::allocator<html2md::Converter::TagImage>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagImage, std::allocator<html2md::Converter::TagImage>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagImage, std::allocator<html2md::Converter::TagImage>>, html2md::Converter::TagImage, std::allocator<html2md::Converter::TagImage>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagImage, std::allocator<html2md::Converter::TagImage>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:128:20: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagImage, 0>' requested here
128 | tags_[kTagImg] = make_shared<Converter::TagImage>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagSeperator' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagSeperator>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagSeperator>>::destroy<html2md::Converter::TagSeperator, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagSeperator, std::allocator<html2md::Converter::TagSeperator>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagSeperator, std::allocator<html2md::Converter::TagSeperator>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagSeperator, std::allocator<html2md::Converter::TagSeperator>>, html2md::Converter::TagSeperator, std::allocator<html2md::Converter::TagSeperator>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagSeperator, std::allocator<html2md::Converter::TagSeperator>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:129:26: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagSeperator, 0>' requested here
129 | tags_[kTagSeperator] = make_shared<Converter::TagSeperator>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagBold' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagBold>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagBold>>::destroy<html2md::Converter::TagBold, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagBold, std::allocator<html2md::Converter::TagBold>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagBold, std::allocator<html2md::Converter::TagBold>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagBold, std::allocator<html2md::Converter::TagBold>>, html2md::Converter::TagBold, std::allocator<html2md::Converter::TagBold>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagBold, std::allocator<html2md::Converter::TagBold>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:132:18: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagBold, 0>' requested here
132 | auto tagBold = make_shared<Converter::TagBold>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagItalic' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagItalic>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagItalic>>::destroy<html2md::Converter::TagItalic, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagItalic, std::allocator<html2md::Converter::TagItalic>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagItalic, std::allocator<html2md::Converter::TagItalic>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagItalic, std::allocator<html2md::Converter::TagItalic>>, html2md::Converter::TagItalic, std::allocator<html2md::Converter::TagItalic>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagItalic, std::allocator<html2md::Converter::TagItalic>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:136:20: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagItalic, 0>' requested here
136 | auto tagItalic = make_shared<Converter::TagItalic>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagUnderline' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagUnderline>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagUnderline>>::destroy<html2md::Converter::TagUnderline, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagUnderline, std::allocator<html2md::Converter::TagUnderline>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagUnderline, std::allocator<html2md::Converter::TagUnderline>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagUnderline, std::allocator<html2md::Converter::TagUnderline>>, html2md::Converter::TagUnderline, std::allocator<html2md::Converter::TagUnderline>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagUnderline, std::allocator<html2md::Converter::TagUnderline>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:142:26: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagUnderline, 0>' requested here
142 | tags_[kTagUnderline] = make_shared<Converter::TagUnderline>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagStrikethrought' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagStrikethrought>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagStrikethrought>>::destroy<html2md::Converter::TagStrikethrought, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagStrikethrought, std::allocator<html2md::Converter::TagStrikethrought>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagStrikethrought, std::allocator<html2md::Converter::TagStrikethrought>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagStrikethrought, std::allocator<html2md::Converter::TagStrikethrought>>, html2md::Converter::TagStrikethrought, std::allocator<html2md::Converter::TagStrikethrought>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagStrikethrought, std::allocator<html2md::Converter::TagStrikethrought>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:144:28: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagStrikethrought, 0>' requested here
144 | auto tagStrighthrought = make_shared<Converter::TagStrikethrought>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagBlockquote' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagBlockquote>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagBlockquote>>::destroy<html2md::Converter::TagBlockquote, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagBlockquote, std::allocator<html2md::Converter::TagBlockquote>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagBlockquote, std::allocator<html2md::Converter::TagBlockquote>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagBlockquote, std::allocator<html2md::Converter::TagBlockquote>>, html2md::Converter::TagBlockquote, std::allocator<html2md::Converter::TagBlockquote>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagBlockquote, std::allocator<html2md::Converter::TagBlockquote>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:148:27: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagBlockquote, 0>' requested here
148 | tags_[kTagBlockquote] = make_shared<Converter::TagBlockquote>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagTable' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagTable>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagTable>>::destroy<html2md::Converter::TagTable, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTable, std::allocator<html2md::Converter::TagTable>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagTable, std::allocator<html2md::Converter::TagTable>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagTable, std::allocator<html2md::Converter::TagTable>>, html2md::Converter::TagTable, std::allocator<html2md::Converter::TagTable>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagTable, std::allocator<html2md::Converter::TagTable>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:151:22: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagTable, 0>' requested here
151 | tags_[kTagTable] = make_shared<Converter::TagTable>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagTableRow' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagTableRow>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagTableRow>>::destroy<html2md::Converter::TagTableRow, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTableRow, std::allocator<html2md::Converter::TagTableRow>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagTableRow, std::allocator<html2md::Converter::TagTableRow>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagTableRow, std::allocator<html2md::Converter::TagTableRow>>, html2md::Converter::TagTableRow, std::allocator<html2md::Converter::TagTableRow>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagTableRow, std::allocator<html2md::Converter::TagTableRow>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:152:25: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagTableRow, 0>' requested here
152 | tags_[kTagTableRow] = make_shared<Converter::TagTableRow>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagTableHeader' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagTableHeader>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagTableHeader>>::destroy<html2md::Converter::TagTableHeader, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTableHeader, std::allocator<html2md::Converter::TagTableHeader>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagTableHeader, std::allocator<html2md::Converter::TagTableHeader>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagTableHeader, std::allocator<html2md::Converter::TagTableHeader>>, html2md::Converter::TagTableHeader, std::allocator<html2md::Converter::TagTableHeader>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagTableHeader, std::allocator<html2md::Converter::TagTableHeader>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:153:28: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagTableHeader, 0>' requested here
153 | tags_[kTagTableHeader] = make_shared<Converter::TagTableHeader>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:81: warning: destructor called on non-final 'html2md::Converter::TagTableData' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator_traits.h:368:9: note: in instantiation of member function 'std::allocator<html2md::Converter::TagTableData>::destroy' requested here
368 | __a.destroy(__p);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:143:31: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<html2md::Converter::TagTableData>>::destroy<html2md::Converter::TagTableData, 0>' requested here
143 | allocator_traits<_Alloc>::destroy(__alloc_, __get_elem());
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:135:34: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTableData, std::allocator<html2md::Converter::TagTableData>>::__on_zero_shared' requested here
135 | _LIBCPP_HIDE_FROM_ABI explicit __shared_ptr_emplace(_Alloc __a, _Args&&... __args) : __alloc_(std::move(__a)) {
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:653:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<html2md::Converter::TagTableData, std::allocator<html2md::Converter::TagTableData>>::__shared_ptr_emplace<>' requested here
653 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__alloc, std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:663:15: note: in instantiation of function template specialization 'std::__allocate_shared_impl<std::__shared_ptr_emplace<html2md::Converter::TagTableData, std::allocator<html2md::Converter::TagTableData>>, html2md::Converter::TagTableData, std::allocator<html2md::Converter::TagTableData>>' requested here
663 | return std::__allocate_shared_impl<_ControlBlock, _Tp>(_CanonicalAlloc(__a), std::forward<_Args>(__args)...);
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/shared_ptr.h:668:15: note: in instantiation of function template specialization 'std::allocate_shared<html2md::Converter::TagTableData, std::allocator<html2md::Converter::TagTableData>, 0>' requested here
668 | return std::allocate_shared<_Tp>(allocator<__remove_cv_t<_Tp> >(), std::forward<_Args>(__args)...);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:154:26: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagTableData, 0>' requested here
154 | tags_[kTagTableData] = make_shared<Converter::TagTableData>();
| ^
/usr/local/clang23/bin/../include/c++/v1/__memory/allocator.h:144:87: note: qualify call to silence this warning
144 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); }
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:50:8: warning: unused function 'ReplaceAll' [-Wunused-function]
50 | size_t ReplaceAll(string *haystack, const string &needle, const char c) {
| ^~~~~~~~~~
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:4:
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.h:350:8: warning: private field 'is_in_table_row_' is not used [-Wunused-private-field]
350 | bool is_in_table_row_ = false;
| ^
[ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o
33 warnings generated.
[ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o
[ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o
[ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.cpp.o
[ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaTokenizer.cpp.o
[ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.cpp.o
[ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o
[ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3ParserSettings.cpp.o
L3Parser.cpp:1113:11: warning: unused variable 'yybot' [-Wunused-variable]
1113 | int yybot = *yybottom;
| ^~~~~
L3Parser.cpp:1133:7: warning: unused variable 'yylno' [-Wunused-variable]
1133 | int yylno = yyrline[yyrule];
| ^~~~~
[ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/MathML.cpp.o
2 warnings generated.
[ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/math/MathML.cpp:404:18: warning: unused variable 'version' [-Wunused-variable]
404 | unsigned int version = sbmlns->getVersion();
| ^~~~~~~
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/math/MathML.cpp:424:16: warning: unused variable 'n' [-Wunused-variable]
424 | unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs();
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/math/MathML.cpp:2177:21: warning: unused variable 'name' [-Wunused-variable]
2177 | const string& name = element1.getName();
| ^~~~
[ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o
3 warnings generated.
[ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o
[ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/CallbackRegistry.cpp.o
[ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/ElementFilter.cpp.o
[ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdFilter.cpp.o
[ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdList.cpp.o
[ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdentifierTransformer.cpp.o
[ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/List.cpp.o
[ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/MathFilter.cpp.o
[ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/MetaIdFilter.cpp.o
[ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o
[ 51%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/Stack.c.o
[ 51%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o
[ 52%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/memory.c.o
[ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/util.cpp.o
[ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o
[ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o
[ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/InternalConsistencyValidator.cpp.o
[ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o
[ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o
[ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o
[ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o
[ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o
[ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o
[ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o
[ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/MathMLConsistencyValidator.cpp.o
[ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ModelingPracticeValidator.cpp.o
[ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/OverdeterminedValidator.cpp.o
[ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o
[ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o
[ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o
[ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o
[ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o
[ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/UnitConsistencyValidator.cpp.o
[ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/VConstraint.cpp.o
[ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/Validator.cpp.o
[ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o
[ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o
[ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentCycles.cpp.o
[ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o
[ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o
[ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o
[ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o
[ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o
[ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o
[ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o
[ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o
[ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o
[ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o
[ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o
[ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o
[ 69%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o
[ 69%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o
[ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o
[ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o
[ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o
[ 71%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o
[ 71%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o
[ 72%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o
[ 72%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/MathMLBase.cpp.o
[ 73%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o
[ 73%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o
[ 74%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o
[ 74%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o
[ 75%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o
[ 75%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o
[ 75%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o
[ 76%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o
[ 76%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o
[ 77%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o
[ 77%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o
[ 78%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCycles.cpp.o
[ 78%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o
[ 79%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o
[ 79%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o
[ 79%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdBase.cpp.o
[ 80%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o
[ 80%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o
[ 81%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o
[ 81%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o
[ 82%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o
[ 82%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o
[ 83%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o
[ 83%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o
[ 83%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o
[ 84%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o
[ 84%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UnitsBase.cpp.o
[ 85%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o
[ 85%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o
[ 86%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/InputDecompressor.cpp.o
[ 86%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o
[ 87%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/bzfstream.cpp.o
[ 87%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/zip.c.o
[ 87%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/unzip.c.o
[ 88%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/ioapi.c.o
[ 88%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/ioapi_mem.c.o
[ 89%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o
[ 89%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o
[ 90%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o
[ 90%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLBuffer.cpp.o
[ 91%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLConstructorException.cpp.o
[ 91%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLError.cpp.o
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/xml/XMLAttributes.cpp:1278:14: error: use of undeclared identifier 'nothrow'; did you mean 'throw'?
1278 | return new(nothrow) XMLAttributes;
| ^~~~~~~
| throw
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/xml/XMLAttributes.cpp:1278:10: error: no matching function for call to 'operator new'
1278 | return new(nothrow) XMLAttributes;
| ^ ~~~~~~~~~
/usr/local/clang23/bin/../include/c++/v1/__new/placement_new_delete.h:23:1: note: candidate function not viable: cannot convert argument of incomplete type 'void' to 'void *' for 2nd argument
23 | operator new(std::size_t, void* __p) _NOEXCEPT {
| ^ ~~~~~~~~~
note: candidate function not viable: cannot convert argument of incomplete type 'void' to 'std::align_val_t' for 2nd argument
note: candidate function not viable: requires 1 argument, but 2 were provided
2 errors generated.
make[3]: *** [src/CMakeFiles/sbml-static.dir/build.make:2893: src/CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/xml/XMLError.cpp:877:14: error: use of undeclared identifier 'nothrow'; did you mean 'throw'?
877 | return new(nothrow) XMLError;
| ^~~~~~~
| throw
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/xml/XMLError.cpp:877:10: error: no matching function for call to 'operator new'
877 | return new(nothrow) XMLError;
| ^ ~~~~~~~~~
/usr/local/clang23/bin/../include/c++/v1/__new/placement_new_delete.h:23:1: note: candidate function not viable: cannot convert argument of incomplete type 'void' to 'void *' for 2nd argument
23 | operator new(std::size_t, void* __p) _NOEXCEPT {
| ^ ~~~~~~~~~
note: candidate function not viable: cannot convert argument of incomplete type 'void' to 'std::align_val_t' for 2nd argument
note: candidate function not viable: requires 1 argument, but 2 were provided
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/xml/XMLError.cpp:886:14: error: use of undeclared identifier 'nothrow'; did you mean 'throw'?
886 | return new(nothrow) XMLError((int)errorId, message);
| ^~~~~~~
| throw
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-src/src/sbml/xml/XMLError.cpp:886:10: error: no matching function for call to 'operator new'
886 | return new(nothrow) XMLError((int)errorId, message);
| ^ ~~~~~~~~~
/usr/local/clang23/bin/../include/c++/v1/__new/placement_new_delete.h:23:1: note: candidate function not viable: cannot convert argument of incomplete type 'void' to 'void *' for 2nd argument
23 | operator new(std::size_t, void* __p) _NOEXCEPT {
| ^ ~~~~~~~~~
note: candidate function not viable: cannot convert argument of incomplete type 'void' to 'std::align_val_t' for 2nd argument
note: candidate function not viable: requires 1 argument, but 2 were provided
4 errors generated.
make[3]: *** [src/CMakeFiles/sbml-static.dir/build.make:2935: src/CMakeFiles/sbml-static.dir/sbml/xml/XMLError.cpp.o] Error 1
make[2]: *** [CMakeFiles/Makefile2:250: src/CMakeFiles/sbml-static.dir/all] Error 2
gmake[1]: *** [Makefile:156: all] Error 2
gmake[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-build'
-- Install configuration: "Release"
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/share/cmake/Modules/FindLIBSBML.cmake
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/share/cmake/Modules/FindLIBXML.cmake
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/share/cmake/Modules/FindBZ2.cmake
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/share/cmake/Modules/FindZLIB.cmake
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/common/L3v2extendedmathExtensionTypes.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/common/l3v2extendedmathfwd.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathSBMLError.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathSBMLErrorTable.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/annotation/CVTerm.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/annotation/Date.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/annotation/ModelCreator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/annotation/ModelHistory.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/annotation/RDFAnnotation.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/annotation/RDFAnnotationParser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/common-documentation.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/common-sbmlerror-codes.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/common.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/extern.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/libsbml-config.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/libsbml-version.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/operationReturnValues.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/sbmlfwd.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/CompressCommon.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/InputDecompressor.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/OutputCompressor.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/bzfstream.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/crypt.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/ioapi.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/ioapi_mem.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/iowin32.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/unzip.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/zfstream.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/zip.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/compress/zipfstream.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/ConversionOption.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/ConversionProperties.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/ExpressionAnalyser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLConverterRegister.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLConverterRegistry.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLConverterTypes.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLFunctionDefinitionConverter.h
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-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLInferUnitsConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLInitialAssignmentConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLLevel1Version1Converter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLLevelVersionConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLLocalParameterConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLRateOfConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLRateRuleConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLReactionConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLRuleConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLStripPackageConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/conversion/SBMLUnitsConverter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/ASTBasePlugin.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/ISBMLExtensionNamespaces.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBMLDocumentPlugin.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBMLDocumentPluginNotRequired.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBMLExtension.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBMLExtensionException.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBMLExtensionNamespaces.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBMLExtensionRegister.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBMLExtensionRegistry.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBaseExtensionPoint.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBasePlugin.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBasePluginCreator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/SBasePluginCreatorBase.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/html2md/html2md.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/html2md/table.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/blockparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/breaklineparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/checklistparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/codeblockparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/emphasizedparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/headlineparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/horizontallineparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/htmlparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/imageparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/inlinecodeparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/italicparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/latexblockparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/lineparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/linkparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/orderedlistparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/paragraphparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/parser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/parserconfig.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/quoteparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/strikethroughparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/strongparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/tableparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/maddy/unorderedlistparser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/math/ASTNode.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/math/ASTNodeType.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/math/DefinitionURLRegistry.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/math/FormulaFormatter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/math/FormulaParser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/math/FormulaTokenizer.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/math/L3FormulaFormatter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/math/L3Parser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/math/L3ParserSettings.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/math/MathML.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/units/FormulaUnitsData.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/units/UnitFormulaFormatter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/units/UnitKindList.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/CallbackRegistry.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/ElementFilter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/IdFilter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/IdList.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/IdentifierTransformer.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/List.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/MathFilter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/MetaIdFilter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/PrefixTransformer.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/Stack.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/StringBuffer.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/memory.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/util/util.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/ConsistencyValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/ConstraintMacros.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/IdentifierConsistencyValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/InternalConsistencyValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/L1CompatibilityValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/L2v1CompatibilityValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/L2v2CompatibilityValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/L2v3CompatibilityValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/L2v4CompatibilityValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/L3v1CompatibilityValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/L3v2CompatibilityValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/MathMLConsistencyValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/ModelingPracticeValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/OverdeterminedValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/SBMLExternalValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/SBMLInternalValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/SBMLValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/SBOConsistencyValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/StrictUnitConsistencyValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/UnitConsistencyValidator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/VConstraint.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/validator/Validator.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/ExpatAttributes.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/ExpatHandler.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/ExpatParser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/LibXMLAttributes.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/LibXMLHandler.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/LibXMLNamespaces.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/LibXMLParser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/LibXMLTranscode.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLAttributes.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLBuffer.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLConstructorException.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLError.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLExtern.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLFileBuffer.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLHandler.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLInputStream.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLLogOverride.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLMemoryBuffer.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLNamespaces.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLNode.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLOutputStream.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLParser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLToken.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLTokenizer.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLTriple.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XercesAttributes.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XercesHandler.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XercesNamespaces.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XercesParser.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XercesTranscode.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/AlgebraicRule.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/AssignmentRule.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Compartment.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/CompartmentType.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Constraint.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Delay.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Event.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/EventAssignment.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/ExpectedAttributes.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/FunctionDefinition.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/InitialAssignment.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/KineticLaw.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/ListOf.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/LocalParameter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Model.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/ModifierSpeciesReference.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Parameter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Priority.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/RateRule.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Reaction.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Rule.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLConstructorException.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLError.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorTable.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLNamespaces.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLReader.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTransforms.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypeCodes.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLVisitor.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLWriter.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBO.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBase.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SimpleSpeciesReference.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Species.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SpeciesReference.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SpeciesType.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/StoichiometryMath.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SyntaxChecker.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Trigger.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/Unit.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/UnitDefinition.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/UnitKind.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/libsbml-config-common.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/libsbml-config-packages.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/libsbml-namespace.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/libsbml-package.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/common/libsbml-version.h
-- Installing: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/extension/RegisterExtensions.h
CMake Error at src/cmake_install.cmake:373 (file):
file INSTALL cannot find
"/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-build/src/libsbml-static.a":
No such file or directory.
Call Stack (most recent call first):
cmake_install.cmake:56 (include)
Make install failed!
configure: creating ./config.status
config.status: creating src/Makevars
Final src/Makevars
PKG_CPPFLAGS= -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2
PKG_LIBS= $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) -L/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/lib/ -lsbml-static -lxml2 -lbz2
# r2sbml.so statically links libsbml, so it inherits the debug info of every
# libsbml object the linker pulls in. Removing it takes the installed shared
# object from ~65MB to ~6.6MB. Global symbols are kept, so the R-level
# interface is unaffected; only DWARF is discarded.
#
# Guarded on uname because the flag spelling differs: GNU binutils uses
# --strip-debug, Apple's strip uses -S. Anything else is left alone.
all: $(SHLIB) strippedLib
strippedLib: $(SHLIB)
@if command -v strip >/dev/null 2>&1; then \
case `uname -s` in \
Linux) strip --strip-debug $(SHLIB) || true ;; \
Darwin) strip -S $(SHLIB) || true ;; \
esac; \
fi
.PHONY: all strippedLib
** libs
using C++ compiler: ‘clang version 23.1.4’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/r2sbml/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c compartmentInfo.cpp -o compartmentInfo.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c convertReactions.cpp -o convertReactions.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c echoSBML.cpp -o echoSBML.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c getMath.cpp -o getMath.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c getModel.cpp -o getModel.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c getSpeciesNum.cpp -o getSpeciesNum.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c paramInfo.cpp -o paramInfo.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c printSBML.cpp -o printSBML.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c reactionInfo.cpp -o reactionInfo.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/ -I/usr/include/libxml2 -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c speciesInfo.cpp -o speciesInfo.o
In file included from getSpeciesNum.cpp:3:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]In file included from
getMath.cpp:47:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h298: | 298 : 8v:o iwarning: d'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
add (cons t298 | S B MvLoEirdr oard&d e(rcroonrsIn file included from )tcompartmentInfo.cpp; :
S5 B:
| M ^LIn file included from
E/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.hr:r48o:
rIn file included from &/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h :e305r:
ro/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.hr:)/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h298;::
2008 ::| 16 ^ :
warning: note: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
200 | virtu a298/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hl | : 200vv:oo16ii:dd anote: dahidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')dd
d ((c oc200no | snt sS BtvM LisErrttdu:a:ll riosrt&v< oeXirdMr LaEdrdr oo(rrc)>o;&
n se tr rsotr| ds:):;l
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| t ^<
XMLError/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h>:&211 :e16r:r In file included from ospeciesInfo.cppnote: /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hr:shidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &'):5)
;200:
: In file included from 16211/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h| : ^ | :
48 note: :
vhidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')In file included from i
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hr::t 305211u200:
:a | 16 /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.hl: :v v298oinote: rhidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &'):it
8du: a a211dlwarning: In file included from | d (vciorntsuta ls 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]echoSBML.cpp tvdo:v
:i:o3dvi:
eacdd In file included from td 298/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.ho r(<cXoMna | : LsEtr rsotrd48d d*::
v>o:ivIn file included from (&d eecrtroorr<sX)M;L
E/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.hc ardrdo:o| n r305 ^s(*c>:
t/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.ho& :sn In file included from 298In file included from tsegetModel.cpp:getSpeciesNum.cppdtr:8:: r3:3:SlBiMo:
:
sLtE<rrIn file included from In file included from warning: Xrso)/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]Mr;::
L&
4848E re:
:
| rr In file included from In file included from ^or298o/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h
r | r::> & )305305In file included from ve;:
:
getMath.cpp/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.horird
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h::o rasd) :47317d;
| 298:
:( ^:In file included from 8c|
8/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:o ^n:s:
t48 warning: warning: :
S'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hB
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:M ::211L317E200r305: | :r:
16 29816o/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h: | : r: v &317note: onote: v :hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')ihidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')oe8r
rdo
ri: )d;
a d da 211( warning: 200d | dc| o ^n'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]s |
t ( S317Bvcvo | n s tv osiM/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hiitdd :a:dldi s(tc<oSL:rrntBuMaLE200rtrslE:uoart r16l& vsrtodr::veoro>:&l ie irisdrnote: dot rhidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &') ra<aod
)dSdr d;B s(
M200)c( L | ;oc| E
no ^r sn
rv| tsoi ^r ts tsrt>
&tdd :u:e:al:/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hrliv::r se200200ovtc::ro<t1616siXo::)dMr note: ;hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &') L<Enote:
aXdr rhidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')M d| o
L200 ^(rE |
c>r 200o&rv | /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hn oi :serr 200vti rsr*rt:uttu>o16ada&r:l:l: ls ei)snote: thidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')<vXoMivror;
LdEiro dr ra| d200aosr) ^d | d>;&
d e(r v(icrotnu| c ^r/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hsatl o
o: snrs211vtodstIn file included from :i:d: laidsdt <(XcMoLnEsrtr osr) compartmentInfo.cpp16t>d&:;s:: :elrirsotr<s
t5 X) d:
note: M;L
E| :In file included from :hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')l irsr ^/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h
| to<
: ^r X48M
>211:
L/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h& | In file included from E:r/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h 211vr:oerr::i211>r&305 16er:to:
:r16ur/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h r:as:note: o l)317hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')rnote: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &');:
sv
8)o : ;i211| 211warning:
'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]d | ^ |
a | ^dv 317
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hdiv | : ri 211(tr/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h :cut:v16oau211o:inla: ds l16note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')atv :
d ov ds tiodnote: a(dcdo n(sct211dihidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')o | : d vaidrdt u(aclo nvsoti
ns:dv satstt eddd: :(vced 211scttooc: | :dl:nrstto rs i:sv<<tXdM:L teXcM:Evv<tSLrercioBEotro*r>rrMrLr<oX&M LeErrrroorrs*)t<Er>;uXrIn file included from *reactionInfo.cpp&
aMrL>: 10 :
loE&r reer| rIn file included from ro>rr ^o/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.hv&* >e&r
er:ororrs48In file included from irdor):
getSpeciesNum.cpps ro;In file included from :/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h)asr
3:;d)s :
305
d;)
| In file included from ^:
; /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h
| /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h(:
| : ^cIn file included from 298 ^48
ospeciesInfo.cpp:|
:
n:s8In file included from ^In file included from 5t:getMath.cpp
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:
:::In file included from s47twarning: d200'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]305In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:
::
:
echoSBML.cpp:In file included from 16:/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.hv:e48c/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h::3:
t : 326:
In file included from o29848note: :hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.hr | :
8
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:<In file included from X ::305 /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.hM 48:
200:Lvwarning: :
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h | 305Eo'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]In file included from : :
ri
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h317 /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.hrdoIn file included from :: v: rparamInfo.cpp3058326i326a*::
:/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h | r:d>10 :
: t8d&warning: In file included from 317/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h u: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]:v:a48 (e
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warning: c: ir In file included from 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.ho 317dsv)o
:nwarning: | 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual] ;i305 s
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:211onote: st 200:rhidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &'))| s ^v:i16&
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ueal ot/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hr rla vvi :200odrooids200 | d (vcsi)d t:diorntsuta ls tvd; a16:do:
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t X(McL/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hooo< oEnrsrto:nnnX200M rs200sss | L>t:ttt E&rd16 s r::sstveo: ttdddirrlnote: :::rr>ihidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &'):::to&s
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Ls16211r211tcompartmentInfo.cppE:t | : /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hu:r <note: 16hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &') :a5rX:
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o Mnote: :i In file included from rL16hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')r211v/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h>:&E
t | o: ru i48note: era 211d:
hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')rorlov | In file included from
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it/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hMssaddd :Ltt da:d:211211Edrd:dv e : | ::r:(cc(v 16ovrtoce :veic*t>onroc rot&usat<ntnote: or l Xsshidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')r<<e Mvtt
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*t/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h)/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h>:d;:/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:&48:
305:48 :
: :
200:
eIn file included from r| rvo:/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.hIn file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h ^er16:/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:
cs:326:305t) :305:
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hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &'):/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h<326
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: note: dhidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &') enote:
| note: r hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')( ^hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')r200
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200 < i :vSad20016oBd | : iMda dL dnote: vhidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &') E(di
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rrahidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')d st)u;a
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i nd/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hvs :i/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hta211r: d:t211usd16:at :16ld( : :c note: v:onote: nhidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')olhidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')s
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:*16v>:&e ecrnote: rthidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')oor
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:In file included from :/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.hv:e48c:
tIn file included from o/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.hr:<305X:
M/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.hL:E326r:r8o:r *warning: >'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]&
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tIn file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.hs:t48d:
:In file included from :/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.hv:e305c:
t/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.ho:r326<:S8B:M Lwarning: E'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]r
ror >326& | e rvrooirds )a;d
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onst s/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.ht:d200:::16v:e cnote: thidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')o
r<S B200M | L E rvriorrt>u&a le rvrooirds )a;d
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onst st/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hd::200::l16i:s tnote: <hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')X
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d (con/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.hs:t211 :s16t:d :note: :hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')l
ist <211X | M L Evrirrotru>a&l evroriodr sa)d;d
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nst std/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:::211v:e16c:t onote: rhidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')<
XML E211r | r o rv*i>r&t uearlr ovrosi)d;
a d| d ^
(const std::vector<XMLError*>& errors);
| ^
In file included from printSBML.cpp:3:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
298 | void add (const SBMLError& error);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
200 | virtual void add (const std::list<XMLError>& errors);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
211 | virtual void add (const std::vector<XMLError*>& errors);
| ^
In file included from printSBML.cpp:3:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
317 | void add (const std::list<SBMLError>& errors);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
200 | virtual void add (const std::list<XMLError>& errors);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
211 | virtual void add (const std::vector<XMLError*>& errors);
| ^
In file included from printSBML.cpp:3:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
326 | void add (const std::vector<SBMLError>& errors);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
200 | virtual void add (const std::list<XMLError>& errors);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
211 | virtual void add (const std::vector<XMLError*>& errors);
| ^
In file included from convertReactions.cpp:57:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
298 | void add (const SBMLError& error);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
200 | virtual void add (const std::list<XMLError>& errors);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
211 | virtual void add (const std::vector<XMLError*>& errors);
| ^
In file included from convertReactions.cpp:57:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
317 | void add (const std::list<SBMLError>& errors);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
200 | virtual void add (const std::list<XMLError>& errors);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
211 | virtual void add (const std::vector<XMLError*>& errors);
| ^
In file included from convertReactions.cpp:57:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
326 | void add (const std::vector<SBMLError>& errors);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
200 | virtual void add (const std::list<XMLError>& errors);
| ^
/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
211 | virtual void add (const std::vector<XMLError*>& errors);
| ^
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o r2sbml.so RcppExports.o compartmentInfo.o convertReactions.o echoSBML.o getMath.o getModel.o getSpeciesNum.o paramInfo.o printSBML.o reactionInfo.o speciesInfo.o -L/data/localhost/ripley/R/R-clang/lib -lRlapack -L/data/localhost/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -L/data/localhost/ripley/R/packages/tests-clang/r2sbml/src/libsbml-install/lib/ -lsbml-static -lxml2 -lbz2
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/r2sbml/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/r2sbml/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/r2sbml/src'
installing to /data/localhost/ripley/R/packages/tests-clang/r2sbml.Rcheck/00LOCK-r2sbml/00new/r2sbml/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘r2sbml’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/data/localhost/ripley/R/packages/tests-clang/r2sbml.Rcheck/00LOCK-r2sbml/00new/r2sbml/libs/r2sbml.so':
/data/localhost/ripley/R/packages/tests-clang/r2sbml.Rcheck/00LOCK-r2sbml/00new/r2sbml/libs/r2sbml.so: undefined symbol: unzReadCurrentFile
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/data/localhost/ripley/R/packages/tests-clang/r2sbml.Rcheck/r2sbml’