* installing *source* package ‘qpdf’ ...
** package ‘qpdf’ successfully unpacked and MD5 sums checked
** using staged installation
Using bundled qpdf (recommended)
** libs
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/qpdf/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bindings.cpp -o bindings.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/BitStream.cc -o libqpdf/BitStream.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/BitWriter.cc -o libqpdf/BitWriter.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Buffer.cc -o libqpdf/Buffer.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/BufferInputSource.cc -o libqpdf/BufferInputSource.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/ClosedFileInputSource.cc -o libqpdf/ClosedFileInputSource.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/ContentNormalizer.cc -o libqpdf/ContentNormalizer.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/FileInputSource.cc -o libqpdf/FileInputSource.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/InputSource.cc -o libqpdf/InputSource.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/InsecureRandomDataProvider.cc -o libqpdf/InsecureRandomDataProvider.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/JSON.cc -o libqpdf/JSON.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/MD5.cc -o libqpdf/MD5.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/OffsetInputSource.cc -o libqpdf/OffsetInputSource.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pipeline.cc -o libqpdf/Pipeline.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_AES_PDF.cc -o libqpdf/Pl_AES_PDF.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_ASCII85Decoder.cc -o libqpdf/Pl_ASCII85Decoder.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_ASCIIHexDecoder.cc -o libqpdf/Pl_ASCIIHexDecoder.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_Buffer.cc -o libqpdf/Pl_Buffer.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_Concatenate.cc -o libqpdf/Pl_Concatenate.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_Count.cc -o libqpdf/Pl_Count.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_DCT.cc -o libqpdf/Pl_DCT.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_Discard.cc -o libqpdf/Pl_Discard.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_Flate.cc -o libqpdf/Pl_Flate.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_LZWDecoder.cc -o libqpdf/Pl_LZWDecoder.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_MD5.cc -o libqpdf/Pl_MD5.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_PNGFilter.cc -o libqpdf/Pl_PNGFilter.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_QPDFTokenizer.cc -o libqpdf/Pl_QPDFTokenizer.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_RC4.cc -o libqpdf/Pl_RC4.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_RunLength.cc -o libqpdf/Pl_RunLength.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_SHA2.cc -o libqpdf/Pl_SHA2.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_StdioFile.cc -o libqpdf/Pl_StdioFile.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/Pl_TIFFPredictor.cc -o libqpdf/Pl_TIFFPredictor.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_Array.cc -o libqpdf/QPDF_Array.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_Bool.cc -o libqpdf/QPDF_Bool.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_Dictionary.cc -o libqpdf/QPDF_Dictionary.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_encryption.cc -o libqpdf/QPDF_encryption.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_InlineImage.cc -o libqpdf/QPDF_InlineImage.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_Integer.cc -o libqpdf/QPDF_Integer.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_linearization.cc -o libqpdf/QPDF_linearization.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_Name.cc -o libqpdf/QPDF_Name.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_Null.cc -o libqpdf/QPDF_Null.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_Operator.cc -o libqpdf/QPDF_Operator.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_optimization.cc -o libqpdf/QPDF_optimization.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_pages.cc -o libqpdf/QPDF_pages.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_Real.cc -o libqpdf/QPDF_Real.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_Reserved.cc -o libqpdf/QPDF_Reserved.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_Stream.cc -o libqpdf/QPDF_Stream.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF_String.cc -o libqpdf/QPDF_String.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/qpdf-c.cc -o libqpdf/qpdf-c.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDF.cc -o libqpdf/QPDF.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFAcroFormDocumentHelper.cc -o libqpdf/QPDFAcroFormDocumentHelper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFAnnotationObjectHelper.cc -o libqpdf/QPDFAnnotationObjectHelper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFExc.cc -o libqpdf/QPDFExc.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFFormFieldObjectHelper.cc -o libqpdf/QPDFFormFieldObjectHelper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFMatrix.cc -o libqpdf/QPDFMatrix.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFNameTreeObjectHelper.cc -o libqpdf/QPDFNameTreeObjectHelper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFNumberTreeObjectHelper.cc -o libqpdf/QPDFNumberTreeObjectHelper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFObject.cc -o libqpdf/QPDFObject.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFObjectHandle.cc -o libqpdf/QPDFObjectHandle.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFObjGen.cc -o libqpdf/QPDFObjGen.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFOutlineDocumentHelper.cc -o libqpdf/QPDFOutlineDocumentHelper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFOutlineObjectHelper.cc -o libqpdf/QPDFOutlineObjectHelper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFPageDocumentHelper.cc -o libqpdf/QPDFPageDocumentHelper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFPageLabelDocumentHelper.cc -o libqpdf/QPDFPageLabelDocumentHelper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFPageObjectHelper.cc -o libqpdf/QPDFPageObjectHelper.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFSystemError.cc -o libqpdf/QPDFSystemError.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFTokenizer.cc -o libqpdf/QPDFTokenizer.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFWriter.cc -o libqpdf/QPDFWriter.o
libqpdf/QPDFWriter.cc:3089:9: warning: unused variable 'after_part4' [-Wunused-variable]
3089 | int after_part4 = this->m->next_objid;
| ^~~~~~~~~~~
libqpdf/QPDFWriter.cc:3097:9: warning: unused variable 'after_part6' [-Wunused-variable]
3097 | int after_part6 = this->m->next_objid;
| ^~~~~~~~~~~
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QPDFXRefEntry.cc -o libqpdf/QPDFXRefEntry.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QTC.cc -o libqpdf/QTC.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/QUtil.cc -o libqpdf/QUtil.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/RC4.cc -o libqpdf/RC4.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/rijndael.cc -o libqpdf/rijndael.o
2 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/SecureRandomDataProvider.cc -o libqpdf/SecureRandomDataProvider.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/sha2.c -o libqpdf/sha2.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libqpdf/sha2big.c -o libqpdf/sha2big.o
ar rcs libqpdf/libstatqpdf.a libqpdf/BitStream.o libqpdf/BitWriter.o libqpdf/Buffer.o libqpdf/BufferInputSource.o libqpdf/ClosedFileInputSource.o libqpdf/ContentNormalizer.o libqpdf/FileInputSource.o libqpdf/InputSource.o libqpdf/InsecureRandomDataProvider.o libqpdf/JSON.o libqpdf/MD5.o libqpdf/OffsetInputSource.o libqpdf/Pipeline.o libqpdf/Pl_AES_PDF.o libqpdf/Pl_ASCII85Decoder.o libqpdf/Pl_ASCIIHexDecoder.o libqpdf/Pl_Buffer.o libqpdf/Pl_Concatenate.o libqpdf/Pl_Count.o libqpdf/Pl_DCT.o libqpdf/Pl_Discard.o libqpdf/Pl_Flate.o libqpdf/Pl_LZWDecoder.o libqpdf/Pl_MD5.o libqpdf/Pl_PNGFilter.o libqpdf/Pl_QPDFTokenizer.o libqpdf/Pl_RC4.o libqpdf/Pl_RunLength.o libqpdf/Pl_SHA2.o libqpdf/Pl_StdioFile.o libqpdf/Pl_TIFFPredictor.o libqpdf/QPDF_Array.o libqpdf/QPDF_Bool.o libqpdf/QPDF_Dictionary.o libqpdf/QPDF_encryption.o libqpdf/QPDF_InlineImage.o libqpdf/QPDF_Integer.o libqpdf/QPDF_linearization.o libqpdf/QPDF_Name.o libqpdf/QPDF_Null.o libqpdf/QPDF_Operator.o libqpdf/QPDF_optimization.o libqpdf/QPDF_pages.o libqpdf/QPDF_Real.o libqpdf/QPDF_Reserved.o libqpdf/QPDF_Stream.o libqpdf/QPDF_String.o libqpdf/qpdf-c.o libqpdf/QPDF.o libqpdf/QPDFAcroFormDocumentHelper.o libqpdf/QPDFAnnotationObjectHelper.o libqpdf/QPDFExc.o libqpdf/QPDFFormFieldObjectHelper.o libqpdf/QPDFMatrix.o libqpdf/QPDFNameTreeObjectHelper.o libqpdf/QPDFNumberTreeObjectHelper.o libqpdf/QPDFObject.o libqpdf/QPDFObjectHandle.o libqpdf/QPDFObjGen.o libqpdf/QPDFOutlineDocumentHelper.o libqpdf/QPDFOutlineObjectHelper.o libqpdf/QPDFPageDocumentHelper.o libqpdf/QPDFPageLabelDocumentHelper.o libqpdf/QPDFPageObjectHelper.o libqpdf/QPDFSystemError.o libqpdf/QPDFTokenizer.o libqpdf/QPDFWriter.o libqpdf/QPDFXRefEntry.o libqpdf/QTC.o libqpdf/QUtil.o libqpdf/RC4.o libqpdf/rijndael.o libqpdf/SecureRandomDataProvider.o libqpdf/sha2.o libqpdf/sha2big.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o qpdf.so RcppExports.o bindings.o -Llibqpdf -lstatqpdf -ljpeg -lz
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/qpdf/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/qpdf/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/qpdf/src'
installing to /data/gannet/ripley/R/packages/tests-clang/qpdf.Rcheck/00LOCK-qpdf/00new/qpdf/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qpdf)