• using R Under development (unstable) (2026-07-26 r90304)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)     flang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-07-26 21:56:12 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘pulsar/DESCRIPTION’ ... OK
• this is package ‘pulsar’ version ‘0.3.13’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘pulsar’ can be installed ... [12s/16s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/29s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [127s/166s] ERROR   Running ‘testthat.R’ [126s/165s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > suppressPackageStartupMessages(library(testthat))   > suppressPackageStartupMessages(library(pulsar))   >   > testthat::test_check("pulsar")   Saving _problems/test_pulsar-23.R   Saving _problems/test_pulsar-25.R   Saving _problems/test_pulsar-38.R   Saving _problems/test_pulsar-41.R   [ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──   Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.   Backtrace:        ▆     1. ├─testthat::expect_warning(...)     2. │ └─testthat:::quasi_capture(...)     3. │ ├─testthat (local) .capture(...)     4. │ │ └─base::withCallingHandlers(...)     5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)     7. └─pulsar:::.try_mclapply(...)     8. ├─base::withCallingHandlers(...)     9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)    10. └─base::lapply(X = X, FUN = FUN, ...)    11. └─pulsar (local) FUN(X[[i]], ...)    12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))    13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)    14. └─huge::huge.mb(...)    15. └─huge:::.huge_default_lambda(...)   ── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──   Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.   Backtrace:        ▆     1. ├─testthat::expect_warning(...)     2. │ └─testthat:::quasi_capture(...)     3. │ ├─testthat (local) .capture(...)     4. │ │ └─base::withCallingHandlers(...)     5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)     7. └─pulsar:::.try_mclapply(...)     8. ├─base::withCallingHandlers(...)     9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)    10. └─base::lapply(X = X, FUN = FUN, ...)    11. └─pulsar (local) FUN(X[[i]], ...)    12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))    13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)    14. └─huge::huge.mb(...)    15. └─huge:::.huge_default_lambda(...)   ── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──   <subscriptOutOfBoundsError/error/condition>   Error in `est$merge[[i]]`: subscript out of bounds   Backtrace:       ▆    1. ├─testthat::expect_warning(...)    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)    7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)   ── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──   Error: Job with id 1 not terminated   Backtrace:       ▆    1. ├─testthat::expect_warning(...)    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)    7. └─batchtools::loadResult(id = 1, reg = reg)    8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)      [ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [71s/84s] OK
• checking PDF version of manual ... [8s/10s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR