• using R Under development (unstable) (2026-02-12 r89409)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.8     flang version 21.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-02-16 01:38:14 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘psycho/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘psycho’ version ‘0.6.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
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• checking if there is a namespace ... OK
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• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘psycho’ can be installed ... [12s/17s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
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• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
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• checking whether the package can be unloaded cleanly ... OK
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• checking loading without being on the library search path ... OK
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• checking R code for possible problems ... [17s/25s] OK
• checking Rd files ... NOTE checkRd: (-1) dprime.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dprime.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dprime.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dprime.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dprime.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
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• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
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• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running examples in ‘psycho-Ex.R’ failed The error most likely occurred in: > ### Name: assess > ### Title: Compare a patient's score to a control group > ### Aliases: assess > > ### ** Examples > > result <- assess(patient = 124, mean = 100, sd = 15, n = 100) Error: ! `mutate_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `mutate()` instead. ℹ See vignette('programming') for more help Backtrace:     ▆  1. ├─psycho::assess(patient = 124, mean = 100, sd = 15, n = 100)  2. │ └─psycho::crawford.test(...)  3. │ └─... %>% ggplot(aes_string(x = "x", ymin = 0, ymax = "y"))  4. ├─ggplot2::ggplot(., aes_string(x = "x", ymin = 0, ymax = "y"))  5. └─dplyr::mutate_(., x = "scales::rescale(x, from=c(0, 1), to = c(sample_mean, sample_mean+sample_sd))")  6. └─dplyr:::lazy_defunct("mutate")  7. └─lifecycle::deprecate_stop(...)  8. └─lifecycle:::deprecate_stop0(msg)  9. └─rlang::cnd_signal(...) Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [9s/10s] ERROR   Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(psycho)   >   > test_check("psycho")   Saving _problems/test-assess-10.R   Saving _problems/test-assess-45.R   The Crawford-Howell (1998) t-test suggests no dissociation between test X and test Y (t(5) = 2.10, p p = 0.090). The patient's score on test X is not significantly altered compared to its score on test Y.      .0.00%   .33.00%   .67.00%   .100.00%   1   [ FAIL 2 | WARN 0 | SKIP 0 | PASS 17 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-assess.R:7:3'): assess ─────────────────────────────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `mutate_()` was deprecated in dplyr 0.7.0 and is now defunct.   ℹ Please use `mutate()` instead.   ℹ See vignette('programming') for more help   Backtrace:       ▆    1. ├─psycho::assess(...) at test-assess.R:7:3    2. │ └─psycho::crawford.test(...)    3. │ └─... %>% ggplot(aes_string(x = "x", ymin = 0, ymax = "y"))    4. ├─ggplot2::ggplot(., aes_string(x = "x", ymin = 0, ymax = "y"))    5. └─dplyr::mutate_(., x = "scales::rescale(x, from=c(0, 1), to = c(sample_mean, sample_mean+sample_sd))")    6. └─dplyr:::lazy_defunct("mutate")    7. └─lifecycle::deprecate_stop(...)    8. └─lifecycle:::deprecate_stop0(msg)    9. └─rlang::cnd_signal(...)   ── Error ('test-assess.R:42:3'): crawford.test ─────────────────────────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `mutate_()` was deprecated in dplyr 0.7.0 and is now defunct.   ℹ Please use `mutate()` instead.   ℹ See vignette('programming') for more help   Backtrace:       ▆    1. ├─psycho::crawford.test(...) at test-assess.R:42:3    2. │ └─... %>% ggplot(aes_string(x = "x", ymin = 0, ymax = "y"))    3. ├─ggplot2::ggplot(., aes_string(x = "x", ymin = 0, ymax = "y"))    4. └─dplyr::mutate_(., x = "scales::rescale(x, from=c(0, 1), to = c(sample_mean, sample_mean+sample_sd))")    5. └─dplyr:::lazy_defunct("mutate")    6. └─lifecycle::deprecate_stop(...)    7. └─lifecycle:::deprecate_stop0(msg)    8. └─rlang::cnd_signal(...)      [ FAIL 2 | WARN 0 | SKIP 0 | PASS 17 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... OK
• checking PDF version of manual ... [7s/10s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs, 1 NOTE