* installing *source* package ‘popPCR’ ... ** this is package ‘popPCR’ version ‘0.1.1.1’ ** package ‘popPCR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)’ using Fortran compiler: ‘flang version 22.1.1 (https://github.com/llvm/llvm-project fef02d48c08db859ef83f84232ed78bd9d1c323a)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/popPCR/src' clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c EMMIXskew_init.c -o EMMIXskew_init.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c density.c -o density.o flang-22 -fpic -O2 -pedantic -c density2.f -o density2.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c distance.c -o distance.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c estep.c -o estep.o flang-22 -fpic -O2 -pedantic -c mixda.f -o mixda.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mixem.c -o mixem.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mixinit.c -o mixinit.o flang-22 -fpic -O2 -pedantic -c mixmsn.f -o mixmsn.o flang-22 -fpic -O2 -pedantic -c mixmsnda.f -o mixmsnda.o flang-22 -fpic -O2 -pedantic -c mixmst.f -o mixmst.o flang-22 -fpic -O2 -pedantic -c mixmstda.f -o mixmstda.o flang-22 -fpic -O2 -pedantic -c mixmvnda.f -o mixmvnda.o flang-22 -fpic -O2 -pedantic -c mixmvtda.f -o mixmvtda.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c module.c -o module.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mstep.c -o mstep.o flang-22 -fpic -O2 -pedantic -c predmixdamsn.f -o predmixdamsn.o flang-22 -fpic -O2 -pedantic -c predmixdamst.f -o predmixdamst.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c scaestep.c -o scaestep.o flang-22 -fpic -O2 -pedantic -c scamstep.f -o scamstep.o clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c zeroin.c -o zeroin.o clang-22 -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o popPCR.so EMMIXskew_init.o density.o density2.o distance.o estep.o mixda.o mixem.o mixinit.o mixmsn.o mixmsnda.o mixmst.o mixmstda.o mixmvnda.o mixmvtda.o module.o mstep.o predmixdamsn.o predmixdamst.o scaestep.o scamstep.o zeroin.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -lflang_rt.runtime -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/popPCR/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/popPCR/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/popPCR/src' installing to /data/gannet/ripley/R/packages/tests-clang/popPCR.Rcheck/00LOCK-popPCR/00new/popPCR/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (popPCR)