• using R Under development (unstable) (2026-01-22 r89323)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.8     flang version 21.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘popEpi/DESCRIPTION’ ... OK
• this is package ‘popEpi’ version ‘0.4.13’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘popEpi’ can be installed ... [33s/85s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [5s/12s] OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... [5s/13s] OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... [5s/11s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [65s/110s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [23s/38s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [124s/165s] ERROR   Running ‘testthat.R’ [123s/164s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   >   > if (requireNamespace("testthat")) {   + library("testthat")   + library("popEpi")   + library("data.table")   +   + using_r_devel <- grepl(pattern = "devel", x = R.version$status)   + if (using_r_devel) {   + ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)   + requireNamespace("data.table")   + data.table::setDTthreads(threads = 1L)   + }   +   + testthat::test_check("popEpi")   + }   Loading required namespace: testthat      Attaching package: 'data.table'      The following object is masked from 'package:base':          %notin%      Saving _problems/test_Surv-18.R   NOTE: entry.status has been set to "DM" for all.      first.bad.surv.int last.bad.surv.int surv.obs                   <int> <int> <num>   1: 61 120 NaN      first.bad.surv.int last.bad.surv.int surv.obs                   <int> <int> <num>   1: 61 120 NaN   Key: <agegr>      agegr first.bad.surv.int last.bad.surv.int surv.obs      <int> <int> <int> <num>   1: 3 61 120 NaN   Key: <agegr>      agegr first.bad.surv.int last.bad.surv.int surv.obs      <int> <int> <int> <num>   1: 3 61 120 NaN   [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]      ══ Skipped tests (41) ══════════════════════════════════════════════════════════   • Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',     'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',     'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',     'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',     'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',     'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',     'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',     'test_splitting_randomly_on_fixed_data.R:9:3',     'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',     'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',     'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',     'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',     'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',     'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',     'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',     'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',     'test_weighter.R:99:3', 'test_weighter.R:122:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──   Expected `popepi_formals` to be identical to `survival_formals`.   Differences:   Component "type": target, current do not match when deparsed      [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [52s/73s] OK
• checking PDF version of manual ... [13s/18s] OK
• checking HTML version of manual ... [16s/28s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR