* installing *source* package ‘phutil’ ...
** this is package ‘phutil’ version ‘0.0.1’
** package ‘phutil’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 20.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/phutil/src'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c bottleneck.cpp -o bottleneck.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c cpp11.cpp -o cpp11.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c diagram_parser.cpp -o diagram_parser.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c wasserstein.cpp -o wasserstein.o
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o phutil.so bottleneck.o cpp11.o diagram_parser.o wasserstein.o -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/phutil/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/phutil/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/phutil/src'
installing to /data/gannet/ripley/R/packages/tests-clang/phutil.Rcheck/00LOCK-phutil/00new/phutil/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (phutil)