* installing *source* package ‘phenex’ ...
** this is package ‘phenex’ version ‘1.4-5’
** package ‘phenex’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/phenex/src'
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c analyzeBits.c -o analyzeBits.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c condition.c -o condition.o
analyzeBits.c:26:6: warning: unused variable 'erg' [-Wunused-variable]
   26 |         int erg;
      |             ^~~
analyzeBits.c:36:6: warning: unused variable 'erg' [-Wunused-variable]
   36 |         int erg;
      |             ^~~
2 warnings generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c date2doy.c -o date2doy.o
date2doy.c:59:3: warning: add explicit braces to avoid dangling else [-Wdangling-else]
   59 |                 else
      |                 ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c phenex.c -o phenex.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c quicksort.c -o quicksort.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c ravg.c -o ravg.o
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c savgol.c -o savgol.o
savgol.c:8:12: warning: unused variable 'h' [-Wunused-variable]
    8 |         int days, h=21, i, j, count, step, position, errorflag=0;
      |                   ^
1 warning generated.
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c sigmoid.c -o sigmoid.o
/usr/local/clang21/bin/clang -std=gnu23 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o phenex.so analyzeBits.o condition.o date2doy.o phenex.o quicksort.o ravg.o savgol.o sigmoid.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/phenex/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/phenex/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/phenex/src'
installing to /data/gannet/ripley/R/packages/tests-clang/phenex.Rcheck/00LOCK-phenex/00new/phenex/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (phenex)