* installing *source* package ‘pcalg’ ...
** this is package ‘pcalg’ version ‘2.7-12’
** package ‘pcalg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 21.1.4’
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pcalg/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I"../inst/include" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c constraint.cpp -o constraint.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I"../inst/include" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c gies.cpp -o gies.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I"../inst/include" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c greedy.cpp -o greedy.o
In file included from constraint.cpp:8:
In file included from ../inst/include/pcalg/constraint.hpp:8:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from greedy.cpp:8:
In file included from ../inst/include/pcalg/greedy.hpp:11:
In file included from ../inst/include/pcalg/score.hpp:12:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
greedy.cpp:862:30: warning: unused variable 'vi' [-Wunused-variable]
  862 |         std::vector<uint>::iterator vi;
      |                                     ^~
In file included from gies.cpp:21:
In file included from ../inst/include/pcalg/constraint.hpp:8:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
/usr/local/clang21/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include   -I"../inst/include" -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c score.cpp -o score.o
1 warning generated.
1 warning generated.
In file included from score.cpp:6:
In file included from ../inst/include/pcalg/score.hpp:12:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
2 warnings generated.
score.cpp:170:29: warning: unused variable 'vi' [-Wunused-variable]
  170 |         std::vector<int>::iterator vi;
      |                                    ^~
2 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o pcalg.so constraint.o gies.o greedy.o init.o score.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pcalg/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pcalg/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pcalg/src'
installing to /data/gannet/ripley/R/packages/tests-clang/pcalg.Rcheck/00LOCK-pcalg/00new/pcalg/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pcalg)