* installing *source* package ‘parglm’ ...
** this is package ‘parglm’ version ‘0.1.7’
** package ‘parglm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 21.1.6’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/parglm/src'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_FC_LEN_T -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c LAPACK_wrappers.cpp -o LAPACK_wrappers.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_FC_LEN_T -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c R_BLAS_LAPACK.cpp -o R_BLAS_LAPACK.o
In file included from LAPACK_wrappers.cpp:1:
./LAPACK_wrappers.h:69:3: warning: all paths through this function will call itself [-Winfinite-recursion]
69 | {
| ^
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_FC_LEN_T -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_FC_LEN_T -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c family.cpp -o family.o
1 warning generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_FC_LEN_T -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c parallel_glm.cpp -o parallel_glm.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_FC_LEN_T -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c parallel_qr.cpp -o parallel_qr.o
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSE_FC_LEN_T -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c thread_pool.cpp -o thread_pool.o
In file included from parallel_qr.cpp:2:
./LAPACK_wrappers.h:69:3: warning: all paths through this function will call itself [-Winfinite-recursion]
69 | {
| ^
In file included from parallel_qr.cpp:1:
In file included from ./parallel_qr.h:5:
./thread_pool.h:212:29: warning: 'result_of<qr_parallel::worker ()>' is deprecated [-Wdeprecated-declarations]
212 | std::future<typename std::result_of<FunctionType()>::type>
| ^
parallel_qr.cpp:71:29: note: while substituting deduced template arguments into function template 'submit' [with FunctionType = worker]
71 | futures.push_back(th_pool.submit(worker(std::move(generator), th_pool)));
| ^
/usr/local/clang21/bin/../include/c++/v1/__type_traits/result_of.h:25:8: note: 'result_of<qr_parallel::worker ()>' has been explicitly marked deprecated here
25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:740:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
740 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from parallel_glm.cpp:2:
./thread_pool.h:212:29: warning: 'result_of<parallelglm_class_QR::worker ()>' is deprecated [-Wdeprecated-declarations]
212 | std::future<typename std::result_of<FunctionType()>::type>
| ^
parallel_glm.cpp:280:22: note: while substituting deduced template arguments into function template 'submit' [with FunctionType = worker]
280 | pool.th_pool.submit(worker(
| ^
/usr/local/clang21/bin/../include/c++/v1/__type_traits/result_of.h:25:8: note: 'result_of<parallelglm_class_QR::worker ()>' has been explicitly marked deprecated here
25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:740:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
740 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from parallel_glm.cpp:2:
./thread_pool.h:212:29: warning: 'result_of<parallelglm_class_QR::get_inner_worker ()>' is deprecated [-Wdeprecated-declarations]
212 | std::future<typename std::result_of<FunctionType()>::type>
| ^
parallel_glm.cpp:339:22: note: while substituting deduced template arguments into function template 'submit' [with FunctionType = get_inner_worker]
339 | pool.th_pool.submit(get_inner_worker(
| ^
/usr/local/clang21/bin/../include/c++/v1/__type_traits/result_of.h:25:8: note: 'result_of<parallelglm_class_QR::get_inner_worker ()>' has been explicitly marked deprecated here
25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:740:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
740 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from parallel_qr.cpp:1:
In file included from ./parallel_qr.h:5:
./thread_pool.h:215:27: warning: 'result_of<qr_parallel::worker ()>' is deprecated [-Wdeprecated-declarations]
215 | typedef typename std::result_of<FunctionType()>::type result_type;
| ^
parallel_qr.cpp:71:29: note: in instantiation of function template specialization 'thread_pool::submit<qr_parallel::worker>' requested here
71 | futures.push_back(th_pool.submit(worker(std::move(generator), th_pool)));
| ^
/usr/local/clang21/bin/../include/c++/v1/__type_traits/result_of.h:25:8: note: 'result_of<qr_parallel::worker ()>' has been explicitly marked deprecated here
25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:740:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
740 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from parallel_glm.cpp:2:
./thread_pool.h:215:27: warning: 'result_of<parallelglm_class_QR::worker ()>' is deprecated [-Wdeprecated-declarations]
215 | typedef typename std::result_of<FunctionType()>::type result_type;
| ^
parallel_glm.cpp:280:22: note: in instantiation of function template specialization 'thread_pool::submit<parallelglm_class_QR::worker>' requested here
280 | pool.th_pool.submit(worker(
| ^
/usr/local/clang21/bin/../include/c++/v1/__type_traits/result_of.h:25:8: note: 'result_of<parallelglm_class_QR::worker ()>' has been explicitly marked deprecated here
25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:740:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
740 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from parallel_glm.cpp:2:
./thread_pool.h:215:27: warning: 'result_of<parallelglm_class_QR::get_inner_worker ()>' is deprecated [-Wdeprecated-declarations]
215 | typedef typename std::result_of<FunctionType()>::type result_type;
| ^
parallel_glm.cpp:339:22: note: in instantiation of function template specialization 'thread_pool::submit<parallelglm_class_QR::get_inner_worker>' requested here
339 | pool.th_pool.submit(get_inner_worker(
| ^
/usr/local/clang21/bin/../include/c++/v1/__type_traits/result_of.h:25:8: note: 'result_of<parallelglm_class_QR::get_inner_worker ()>' has been explicitly marked deprecated here
25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:740:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
740 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang21/bin/../include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
3 warnings generated.
4 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o parglm.so LAPACK_wrappers.o R_BLAS_LAPACK.o RcppExports.o family.o parallel_glm.o parallel_qr.o thread_pool.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/parglm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/parglm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/parglm/src'
installing to /data/gannet/ripley/R/packages/tests-clang/parglm.Rcheck/00LOCK-parglm/00new/parglm/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (parglm)