• using R Under development (unstable) (2026-02-16 r89426)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.8     flang version 21.1.8
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-02-17 09:18:45 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘nlmixr2plot/DESCRIPTION’ ... OK
• this is package ‘nlmixr2plot’ version ‘5.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘nlmixr2plot’ can be installed ... [15s/40s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/13s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/14s] OK
• checking whether the package can be unloaded cleanly ... [4s/12s] OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... [4s/13s] OK
• checking loading without being on the library search path ... [4s/15s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [22s/72s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [4s/13s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [206s/410s] ERROR   Running ‘testthat.R’ [205s/410s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(nlmixr2plot)   >   > test_check("nlmixr2plot")   Saving _problems/test-plots-51.R   Saving _problems/test-plots-52.R   Saving _problems/test-plots-53.R   Saving _problems/test-plots-54.R   Saving _problems/test-plots-57.R   Saving _problems/test-plots-58.R   [ FAIL 6 | WARN 19 | SKIP 2 | PASS 31 ]      ══ Skipped tests (2) ═══════════════════════════════════════════════════════════   • On CRAN (2): 'test-plots-cens.R:2:3', 'test-plots-multiple-endpoints.R:2:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-plots.R:51:3'): test plots with vdiffr ───────────────────────   Expected `vpcPlot(fit, pred_corr = TRUE)` not to throw any errors.   Actually got a <rlang_error> with message:     i In argument: `q5 = quantile(dv, pi[1])`.     i In group 1: `strat = 1`, `sim = 1`, `bin = 1`.     Caused by error in `quantile.default()`:     ! missing values and NaN's not allowed if 'na.rm' is FALSE   Backtrace:        ▆     1. ├─testthat::expect_error(vpcPlot(fit, pred_corr = TRUE), NA) at test-plots.R:51:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. ├─nlmixr2plot::vpcPlot(fit, pred_corr = TRUE)     8. │ └─vpc::vpc_vpc(...)     9. │ └─vpc:::calc_vpc_continuous(...)    10. │ └─sim %>% dplyr::group_by(strat, sim, bin) %>% ...    11. ├─dplyr::summarise(...)    12. ├─dplyr:::summarise.grouped_df(...)    13. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")    14. │ ├─base::withCallingHandlers(...)    15. │ └─dplyr:::map(quosures, summarise_eval_one, mask = mask)    16. │ └─base::lapply(.x, .f, ...)    17. │ └─dplyr (local) FUN(X[[i]], ...)    18. │ └─mask$eval_all_summarise(quo)    19. │ └─dplyr (local) eval()    20. ├─stats::quantile(dv, pi[1])    21. ├─stats:::quantile.default(dv, pi[1])    22. │ └─base::stop("missing values and NaN's not allowed if 'na.rm' is FALSE")    23. └─base::.handleSimpleError(...)    24. └─dplyr (local) h(simpleError(msg, call))    25. └─dplyr (local) handler(cnd)    26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)   ── Failure ('test-plots.R:52:3'): test plots with vdiffr ───────────────────────   Expected `vpcPlot(fitSim, pred_corr = TRUE)` not to throw any errors.   Actually got a <rlang_error> with message:     i In argument: `q5 = quantile(dv, pi[1])`.     i In group 1: `strat = 1`, `sim = 1`, `bin = 1`.     Caused by error in `quantile.default()`:     ! missing values and NaN's not allowed if 'na.rm' is FALSE   Backtrace:        ▆     1. ├─testthat::expect_error(vpcPlot(fitSim, pred_corr = TRUE), NA) at test-plots.R:52:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. ├─nlmixr2plot::vpcPlot(fitSim, pred_corr = TRUE)     8. │ └─vpc::vpc_vpc(...)     9. │ └─vpc:::calc_vpc_continuous(...)    10. │ └─sim %>% dplyr::group_by(strat, sim, bin) %>% ...    11. ├─dplyr::summarise(...)    12. ├─dplyr:::summarise.grouped_df(...)    13. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")    14. │ ├─base::withCallingHandlers(...)    15. │ └─dplyr:::map(quosures, summarise_eval_one, mask = mask)    16. │ └─base::lapply(.x, .f, ...)    17. │ └─dplyr (local) FUN(X[[i]], ...)    18. │ └─mask$eval_all_summarise(quo)    19. │ └─dplyr (local) eval()    20. ├─stats::quantile(dv, pi[1])    21. ├─stats:::quantile.default(dv, pi[1])    22. │ └─base::stop("missing values and NaN's not allowed if 'na.rm' is FALSE")    23. └─base::.handleSimpleError(...)    24. └─dplyr (local) h(simpleError(msg, call))    25. └─dplyr (local) handler(cnd)    26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)   ── Failure ('test-plots.R:53:3'): test plots with vdiffr ───────────────────────   Expected `vpcPlotTad(fit, pred_corr = TRUE)` not to throw any errors.   Actually got a <rlang_error> with message:     i In argument: `q5 = quantile(dv, pi[1])`.     i In group 1: `strat = 1`, `sim = 1`, `bin = 1`.     Caused by error in `quantile.default()`:     ! missing values and NaN's not allowed if 'na.rm' is FALSE   Backtrace:        ▆     1. ├─testthat::expect_error(vpcPlotTad(fit, pred_corr = TRUE), NA) at test-plots.R:53:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. ├─nlmixr2plot::vpcPlotTad(fit, pred_corr = TRUE)     8. │ └─nlmixr2plot::vpcPlot(..., idv = idv)     9. │ └─vpc::vpc_vpc(...)    10. │ └─vpc:::calc_vpc_continuous(...)    11. │ └─sim %>% dplyr::group_by(strat, sim, bin) %>% ...    12. ├─dplyr::summarise(...)    13. ├─dplyr:::summarise.grouped_df(...)    14. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")    15. │ ├─base::withCallingHandlers(...)    16. │ └─dplyr:::map(quosures, summarise_eval_one, mask = mask)    17. │ └─base::lapply(.x, .f, ...)    18. │ └─dplyr (local) FUN(X[[i]], ...)    19. │ └─mask$eval_all_summarise(quo)    20. │ └─dplyr (local) eval()    21. ├─stats::quantile(dv, pi[1])    22. ├─stats:::quantile.default(dv, pi[1])    23. │ └─base::stop("missing values and NaN's not allowed if 'na.rm' is FALSE")    24. └─base::.handleSimpleError(...)    25. └─dplyr (local) h(simpleError(msg, call))    26. └─dplyr (local) handler(cnd)    27. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)   ── Failure ('test-plots.R:54:3'): test plots with vdiffr ───────────────────────   Expected `vpcPlotTad(fitSim, pred_corr = TRUE)` not to throw any errors.   Actually got a <rlang_error> with message:     i In argument: `q5 = quantile(dv, pi[1])`.     i In group 1: `strat = 1`, `sim = 1`, `bin = 1`.     Caused by error in `quantile.default()`:     ! missing values and NaN's not allowed if 'na.rm' is FALSE   Backtrace:        ▆     1. ├─testthat::expect_error(...) at test-plots.R:54:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. ├─nlmixr2plot::vpcPlotTad(fitSim, pred_corr = TRUE)     8. │ └─nlmixr2plot::vpcPlot(..., idv = idv)     9. │ └─vpc::vpc_vpc(...)    10. │ └─vpc:::calc_vpc_continuous(...)    11. │ └─sim %>% dplyr::group_by(strat, sim, bin) %>% ...    12. ├─dplyr::summarise(...)    13. ├─dplyr:::summarise.grouped_df(...)    14. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")    15. │ ├─base::withCallingHandlers(...)    16. │ └─dplyr:::map(quosures, summarise_eval_one, mask = mask)    17. │ └─base::lapply(.x, .f, ...)    18. │ └─dplyr (local) FUN(X[[i]], ...)    19. │ └─mask$eval_all_summarise(quo)    20. │ └─dplyr (local) eval()    21. ├─stats::quantile(dv, pi[1])    22. ├─stats:::quantile.default(dv, pi[1])    23. │ └─base::stop("missing values and NaN's not allowed if 'na.rm' is FALSE")    24. └─base::.handleSimpleError(...)    25. └─dplyr (local) h(simpleError(msg, call))    26. └─dplyr (local) handler(cnd)    27. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)   ── Failure ('test-plots.R:57:3'): test plots with vdiffr ───────────────────────   Expected `vpcCensTad(fit)` not to throw any errors.   Actually got a <notSubsettableError> with message:     object of type 'closure' is not subsettable   Backtrace:        ▆     1. ├─testthat::expect_error(vpcCensTad(fit), NA) at test-plots.R:57:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─nlmixr2plot::vpcCensTad(fit)     8. └─nlmixr2plot::vpcPlot(..., cens = cens, idv = idv)     9. └─vpc::vpc_cens(...)    10. └─vpc:::format_vpc_input_data(...)    11. └─vpc:::standardize_column(...)   ── Failure ('test-plots.R:58:3'): test plots with vdiffr ───────────────────────   Expected `vpcCensTad(fitSim, pred_corr = TRUE)` not to throw any errors.   Actually got a <notSubsettableError> with message:     object of type 'closure' is not subsettable   Backtrace:        ▆     1. ├─testthat::expect_error(...) at test-plots.R:58:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─nlmixr2plot::vpcCensTad(fitSim, pred_corr = TRUE)     8. └─nlmixr2plot::vpcPlot(..., cens = cens, idv = idv)     9. └─vpc::vpc_cens(...)    10. └─vpc:::format_vpc_input_data(...)    11. └─vpc:::standardize_column(...)      [ FAIL 6 | WARN 19 | SKIP 2 | PASS 31 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [6s/12s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR