Install log for 'neuroim2'

* installing *source* package ‘neuroim2’ ...
** this is package ‘neuroim2’ version ‘0.8.1’
** package ‘neuroim2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/neuroim2/src'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c bilateral_filter_3d.cpp -o bilateral_filter_3d.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c bilateral_filter_4d.cpp -o bilateral_filter_4d.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c conncomp.cpp -o conncomp.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c fast_laplacian_enhance.cpp -o fast_laplacian_enhance.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c indexFuns.cpp -o indexFuns.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c kernel_filter.cpp -o kernel_filter.o
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp -DARMA_64BIT_WORD -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c radius_search_3d.cpp -o radius_search_3d.o
/bin/sh: line 2: "/data/gannet/ripley/R/R-clang/bin/Rscript": No such file or directory
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o neuroim2.so RcppExports.o bilateral_filter_3d.o bilateral_filter_4d.o conncomp.o fast_laplacian_enhance.o indexFuns.o kernel_filter.o radius_search_3d.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
/bin/sh: line 3: "/data/gannet/ripley/R/R-clang/bin/Rscript": No such file or directory
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/neuroim2/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/neuroim2/src'
/bin/sh: line 2: "/data/gannet/ripley/R/R-clang/bin/Rscript": No such file or directory
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/neuroim2/src'
installing to /data/gannet/ripley/R/packages/tests-clang/neuroim2.Rcheck/00LOCK-neuroim2/00new/neuroim2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘scale’ in package ‘neuroim2’
Creating a new generic function for ‘ndim’ in package ‘neuroim2’
Creating a new generic function for ‘origin’ in package ‘neuroim2’
Creating a generic function from function ‘split_blocks’ in package ‘neuroim2’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (neuroim2)