* installing *source* package ‘multinma’ ...
** package ‘multinma’ successfully unpacked and MD5 sums checked
** using staged installation
Info: Found int division at 'string', line 164, column 28 to column 32:
nint / int_thin
Values will be rounded towards zero. If rounding is not desired you can write
the division as
nint * 1.0 / int_thin
If rounding is intended please use the integer division operator %/%.
Info: Found int division at 'string', line 164, column 28 to column 32:
nint / int_thin
Values will be rounded towards zero. If rounding is not desired you can write
the division as
nint * 1.0 / int_thin
If rounding is intended please use the integer division operator %/%.
Info: Found int division at 'string', line 169, column 28 to column 32:
nint / int_thin
Values will be rounded towards zero. If rounding is not desired you can write
the division as
nint * 1.0 / int_thin
If rounding is intended please use the integer division operator %/%.
Info: Found int division at 'string', line 177, column 28 to column 32:
nint / int_thin
Values will be rounded towards zero. If rounding is not desired you can write
the division as
nint * 1.0 / int_thin
If rounding is intended please use the integer division operator %/%.
Info: Found int division at 'string', line 165, column 28 to column 32:
nint / int_thin
Values will be rounded towards zero. If rounding is not desired you can write
the division as
nint * 1.0 / int_thin
** libs
using C++ compiler: ‘clang version 17.0.5’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/multinma/src'
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/gannet/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/rstan/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:26:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:540:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/LU:47:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:12:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Jacobi:29:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:43:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/QR:15:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Householder:27:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/QR:48:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SVD:48:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:6:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Geometry:58:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:58:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:66:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:71:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCholesky:43:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:33:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:32:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseQR:34:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:33:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:36:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
239 | int count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
24 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/gannet/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/rstan/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c stanExports_binomial_1par.cc -o stanExports_binomial_1par.o
In file included from stanExports_binomial_1par.cc:3:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from stanExports_binomial_1par.cc:3:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:540:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/LU:47:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:12:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Jacobi:29:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:43:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/QR:15:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Householder:27:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/QR:48:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SVD:48:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:6:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Geometry:58:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:58:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:66:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:71:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCholesky:43:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:33:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:32:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseQR:34:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:33:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
48 | Rprintf("%.*s", n, s);
| ~~^~ ~
/data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
71 | REprintf("%.*s", n, s);
| ~~^~ ~
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:36:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
239 | int count = 0;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable]
33 | bool error = false;
| ^~~~~
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const ArrayWrapper<Diagonal<const Matrix<double, -1, -1, 0, -1, -1>, 0>>, const CwiseNullaryOp<scalar_constant_op<double>, Array<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:38: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>' requested here
47 | || (cholesky.vectorD().array() <= 0.0).any()) {
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const ArrayWrapper<Diagonal<const Matrix<double, -1, -1, 0, -1, -1>, 0>>, const CwiseNullaryOp<scalar_constant_op<double>, Array<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_pos_semidefinite.hpp:46:38: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>' requested here
46 | || (cholesky.vectorD().array() < 0.0).any()) {
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err.hpp:50:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable]
33 | int n_transitions = log_omegas.cols() - 1;
| ^~~~~~~~~~~~~
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:118:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable]
275 | double neg_root_5 = -root_5;
| ^~~~~~~~~~
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_difference_op<int, double> (const int &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_difference_op<int, double> (const int &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Array<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:37: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>' requested here
58 | return result + sum(lgamma(x + (1 - Eigen::ArrayXd::LinSpaced(k, 1, k)) / 2));
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_difference_op<int, double> (const int &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_quotient_op<double, int> (const double &, const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_quotient_op<double, int> (const double &, const int &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_quotient_op<double, int>, const CwiseBinaryOp<scalar_difference_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Array<double, -1, 1, 0, -1, 1>>>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:75: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>' requested here
58 | return result + sum(lgamma(x + (1 - Eigen::ArrayXd::LinSpaced(k, 1, k)) / 2));
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_quotient_op<double, int> (const double &, const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:183:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable]
86 | const int N = stan::math::size(theta);
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1>>, const Eigen::Matrix<double, -1, -1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_product_op<double, double>, const CwiseNullaryOp<scalar_constant_op<double>, const Matrix<double, -1, -1, 0, -1, -1>>, const Matrix<double, -1, -1, 0, -1, -1>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1>>, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:19: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1>>, const Eigen::Matrix<double, -1, -1>>' requested here
71 | B = t * A * B / (s * j);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_difference_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_difference_op<double> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<double, double>, const Matrix<double, -1, 1, 0, -1, 1>, const Matrix<double, -1, 1, 0, -1, 1>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:26:29: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>>' requested here
26 | Eigen::VectorXd delta(q - m_);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_difference_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_quotient_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_quotient_op<double> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_quotient_op<double, double>, const Matrix<double, -1, 1, 0, -1, 1>, const CwiseNullaryOp<scalar_constant_op<double>, const Matrix<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:27:17: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1>>>' requested here
27 | m_ += delta / num_samples_;
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_quotient_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_exp_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_exp_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_exp_op<double>, const CwiseBinaryOp<scalar_difference_op<double, double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:90:49: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>' requested here
90 | return max + std::log((v_ref.array() - max).exp().sum());
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:103:12: note: in instantiation of function template specialization 'stan::math::log_sum_exp(const Eigen::Matrix<double, -1, 1> &)::(anonymous class)::operator()<Eigen::Matrix<double, -1, 1>>' requested here
103 | return f(x);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:81:33: note: in instantiation of function template specialization 'stan::math::apply_vector_unary<Eigen::Matrix<double, -1, 1>>::reduce<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:81:43)>' requested here
81 | return apply_vector_unary<T>::reduce(x, [&](const auto& v) {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:24: note: in instantiation of function template specialization 'stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1>, nullptr>' requested here
59 | double log_sum_y = log_sum_exp(log_y);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_exp_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:87:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable]
82 | size_t N = max_size(y, mu, sigma);
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sqrt_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sqrt_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_sqrt_op<double>, const ArrayWrapper<Diagonal<const Matrix<double, -1, -1, 0, -1, -1>, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:38:53: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>' requested here
38 | Eigen::VectorXd stddev = S_ldlt.vectorD().array().sqrt().matrix();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_sqrt_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sum_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sum_op<double> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1>>>, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>>, 2>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_sum_op<double, double>, const Matrix<double, -1, 1, 0, -1, 1>, const Product<Transpose<TranspositionsBase<Transpositions<-1, -1, int>>>, Product<TriangularView<const Matrix<double, -1, -1, 0, -1, -1>, 5>, Matrix<double, -1, 1, 0, -1, 1>, 0>, 2>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1>>>, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>>, 2>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:46:12: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1>>>, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>>, 2>>' requested here
46 | = mu + (S_ldlt.transpositionsP().transpose() * (S_ldlt.matrixL() * z));
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_sum_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:128:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable]
98 | int n = G.rows(); // number of states
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:139:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable]
26 | const int n_states = omegas.rows();
| ^~~~~~~~
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_inverse_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_inverse_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_inverse_op<double>, const ArrayWrapper<Diagonal<const Matrix<double, -1, -1, 0, -1, -1>, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:89:38: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>' requested here
89 | = Sigma_ldlt.vectorD().array().inverse().sqrt().matrix();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_inverse_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sum_op<int> (const int &, const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sum_op<int> (const int &, const int &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_sum_op<int, int>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const Map<const Array<int, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/multinomial_logit_lpmf.hpp:39:47: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>' requested here
39 | lp += lgamma(1 + ns_map.sum()) - lgamma(1 + ns_map).sum();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_sum_op<int> (const int &, const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const int &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_sum_op<int, int>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const Map<const Array<int, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>>' requested here
120 | return apply_scalar_unary<lgamma_fun, T>::apply(x);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/multinomial_logit_lpmf.hpp:39:38: note: in instantiation of function template specialization 'stan::math::lgamma<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>, nullptr>' requested here
39 | lp += lgamma(1 + ns_map.sum()) - lgamma(1 + ns_map).sum();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_opposite_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_opposite_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_opposite_op<double>, const Array<double, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:29: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1>>' requested here
130 | = (cut1 > 0.0).select(-cut1, 0) - (-cut1.abs()).exp().log1p();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_opposite_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_abs_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_abs_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_abs_op<double>, const Array<double, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:48: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>>' requested here
130 | = (cut1 > 0.0).select(-cut1, 0) - (-cut1.abs()).exp().log1p();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_abs_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_log1p_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_log1p_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_log1p_op<double>, const CwiseUnaryOp<scalar_exp_op<double>, const CwiseUnaryOp<scalar_opposite_op<double>, const CwiseUnaryOp<scalar_abs_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:61: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
130 | = (cut1 > 0.0).select(-cut1, 0) - (-cut1.abs()).exp().log1p();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_log1p_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ> (const int &, const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ> (const int &, const int &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Map<const Matrix<int, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>, const CwiseNullaryOp<scalar_constant_op<int>, Matrix<int, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:138:18: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1>>>' requested here
138 | logp = y_vec.cwiseEqual(1)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ> (const int &, const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_difference_op<double, double>, const Array<double, -1, 1, 0, -1, 1>, const Array<double, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log1m_exp.hpp:83:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>>' requested here
83 | return apply_scalar_unary<log1m_exp_fun, T>::apply(x);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:142:50: note: in instantiation of function template specialization 'stan::math::log1m_exp<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>, nullptr>' requested here
142 | m_log_1p_exp_m_cut2 + log1m_exp(cut1 - cut2).array()
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sum_op<int, double> (const int &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sum_op<int, double> (const int &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_sum_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const Array<double, -1, 1, 0, -1, 1>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:164:45: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>>' requested here
164 | = (cut2 > 0).select(exp_m_cut2 / (1 + exp_m_cut2), 1 / (1 + exp(cut2)))
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_sum_op<int, double> (const int &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_difference_op<double, int> (const double &, const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_difference_op<double, int> (const double &, const int &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<double, int>, const Array<double, -1, 1, 0, -1, 1>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:165:44: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>' requested here
165 | - exp_cuts_diff / (exp_cuts_diff - 1);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_difference_op<double, int> (const double &, const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_quotient_op<int, double> (const int &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_quotient_op<int, double> (const int &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_quotient_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const CwiseBinaryOp<scalar_difference_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const Array<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:167:13: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>>>' requested here
167 | = 1 / (1 - exp_cuts_diff)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_quotient_op<int, double> (const int &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:315:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable]
23 | static const char* function = "std_normal_rng";
| ^~~~~~~~
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:335:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable]
72 | double ck = 50;
| ^~
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op (stan::math::vari_value<double> *const &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op (stan::math::vari_value<double> *const &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<adj_Op, Map<Matrix<vari_value<double, void> *, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/divide.hpp:40:31: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>' requested here
40 | -= invc_ * (adjResult.adj().array() * adjResult.val().array()).sum();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op (stan::math::vari_value<double> *const &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op (stan::math::vari_value<double> *const &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op (stan::math::vari_value<double> *const &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Map<Matrix<vari_value<double, void> *, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/divide.hpp:40:57: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>' requested here
40 | -= invc_ * (adjResult.adj().array() * adjResult.val().array()).sum();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op (stan::math::vari_value<double> *const &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<val_Op, const Matrix<var_value<double, void>, -1, -1, 0, -1, -1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:45:12: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>' requested here
45 | Ad = A.val();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<vi_Op, const Matrix<var_value<double, void>, -1, -1, 0, -1, -1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:50:45: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>' requested here
50 | Map<matrix_vi>(vari_ref_A_, M_, M_) = A.vi();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24), const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
52 | = wd.unaryExpr([](double x) { return new vari(x, false); });
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Matrix<var_value<double, void>, -1, -1, 0, -1, -1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>' requested here
110 | return m.unaryExpr([](auto x) { return value_of_rec(x); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: in instantiation of function template specialization 'stan::math::value_of_rec(const Eigen::Matrix<stan::math::var_value<double>, -1, -1> &)::(anonymous class)::operator()<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>' requested here
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:365:6: note: while substituting prior template arguments into non-type template parameter [with F = (lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:109:7), Args = <const Eigen::Matrix<stan::math::var_value<double>, -1, -1> &>]
365 | auto make_holder(const F& func, Args&&... args) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
366 | return internal::make_holder_impl(func,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
367 | std::make_index_sequence<sizeof...(Args)>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
368 | std::forward<Args>(args)...);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
369 | }
| ~
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:108:10: note: while substituting deduced template arguments into function template 'make_holder' [with F = (lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:109:7), Args = <const Eigen::Matrix<stan::math::var_value<double>, -1, -1> &>, $2 = (no value)]
108 | return make_holder(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:83:19: note: in instantiation of function template specialization 'stan::math::value_of_rec<const Eigen::Matrix<stan::math::var_value<double>, -1, -1> &, void, void>' requested here
83 | matrix_d m_eval(value_of_rec(m));
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<vi_Op, Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:88:7: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
88 | res.vi()
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24), const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
52 | = vd.unaryExpr([](double x) { return new vari(x, false); });
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<adj_Op, Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/grad.hpp:27:9: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
27 | g = x.adj();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_log_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_log_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_log_op<double>, const ArrayWrapper<const Diagonal<const Matrix<double, -1, -1, 0, -1, -1>, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log.hpp:66:47: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>' requested here
66 | x, [](const auto& v) { return v.array().log(); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:48:24: note: in instantiation of function template specialization 'stan::math::log(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>> &)::(anonymous class)::operator()<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>' requested here
48 | f(x));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log.hpp:65:41: note: in instantiation of function template specialization 'stan::math::apply_vector_unary<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>::apply<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log.hpp:66:10), Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>, nullptr>' requested here
65 | return apply_vector_unary<Container>::apply(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:20: note: in instantiation of function template specialization 'stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>, nullptr>' requested here
49 | double val = sum(log(ldlt.vectorD()));
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_log_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op (stan::math::vari_value<double> *const &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op (stan::math::vari_value<double> *const &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Map<Matrix<vari_value<double, void> *, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:38: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>' requested here
79 | vector_d di = 2 * adj_ * (v1_map.val() - v2_map.val());
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op (stan::math::vari_value<double> *const &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op (stan::math::vari_value<double> *const &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op (stan::math::vari_value<double> *const &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<adj_Op, Map<Matrix<vari_value<double, void> *, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:80:12: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>' requested here
80 | v1_map.adj() += di;
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op (stan::math::vari_value<double> *const &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<vi_Op, Map<const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/variance.hpp:22:49: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
22 | Eigen::Map<vector_vi>(varis, size) = dtrs_map.vi();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Map<const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/variance.hpp:23:33: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
23 | vector_d dtrs_vals = dtrs_map.val();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_product_op<int, double> (const int &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_product_op<int, double> (const int &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_product_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const ArrayWrapper<Matrix<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/variance.hpp:27:44: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1>>>' requested here
27 | Eigen::Map<vector_d>(partials, size) = 2 * diff.array() / size_m1;
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_product_op<int, double> (const int &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/jacobian.hpp:26:15: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
26 | fx = fx_var.val();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
58 | return a.unaryExpr([](const auto& scal) { return value_of(scal); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: in instantiation of function template specialization 'stan::math::value_of(const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &)::(anonymous class)::operator()<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:365:6: note: while substituting prior template arguments into non-type template parameter [with F = (lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:57:7), Args = <const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &>]
365 | auto make_holder(const F& func, Args&&... args) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
366 | return internal::make_holder_impl(func,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
367 | std::make_index_sequence<sizeof...(Args)>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
368 | std::forward<Args>(args)...);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
369 | }
| ~
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:56:10: note: while substituting deduced template arguments into function template 'make_holder' [with F = (lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:57:7), Args = <const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &>, $2 = (no value)]
56 | return make_holder(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/algebra_solver_fp.hpp:96:29: note: in instantiation of function template specialization 'stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &, nullptr, nullptr>' requested here
96 | y_dummy(stan::math::value_of(y)),
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_square_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_square_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_square_op<double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:182:56: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>>' requested here
182 | return normal_fullrank(Eigen::VectorXd(mu_.array().square()),
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_square_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
1252 | int ret = stan::services::error_codes::CONFIG;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:25:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:9:
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable]
610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols());
| ^~~~
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:25:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:10:
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable]
241 | const Eigen::Index x_cols = x.cols();
| ^~~~~~
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<double, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_logit.hpp:88:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>>' requested here
88 | return apply_scalar_unary<inv_logit_fun, T>::apply(x);
| ^
./stanExports_binomial_1par.h:2967:45: note: in instantiation of function template specialization 'stan::math::inv_logit<Eigen::Matrix<double, -1, 1>, nullptr, nullptr>' requested here
2967 | assign(theta_ipd, nil_index_list(), inv_logit(eta_ipd),
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<double, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::Matrix<double, -1, 1>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Phi.hpp:69:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::Matrix<double, -1, 1>>' requested here
69 | return apply_scalar_unary<Phi_fun, T>::apply(x);
| ^
./stanExports_binomial_1par.h:2973:47: note: in instantiation of function template specialization 'stan::math::Phi<Eigen::Matrix<double, -1, 1>, nullptr>' requested here
2973 | assign(theta_ipd, nil_index_list(), Phi(eta_ipd),
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const MatrixWrapper<const CwiseBinaryOp<scalar_sum_op<double, double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_logit.hpp:88:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
88 | return apply_scalar_unary<inv_logit_fun, T>::apply(x);
| ^
./stanExports_binomial_1par.h:3017:21: note: in instantiation of function template specialization 'stan::math::inv_logit<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, nullptr, nullptr>' requested here
3017 | inv_logit(
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const MatrixWrapper<const CwiseBinaryOp<scalar_sum_op<double, double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Phi.hpp:69:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
69 | return apply_scalar_unary<Phi_fun, T>::apply(x);
| ^
./stanExports_binomial_1par.h:3050:23: note: in instantiation of function template specialization 'stan::math::Phi<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, nullptr>' requested here
3050 | Phi(
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_sum_op<double, double>, const Product<Matrix<double, -1, -1, 0, -1, -1>, Matrix<double, -1, 1, 0, -1, 1>, 0>, const Matrix<double, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_logit.hpp:88:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>' requested here
88 | return apply_scalar_unary<inv_logit_fun, T>::apply(x);
| ^
./stanExports_binomial_1par.h:3127:37: note: in instantiation of function template specialization 'stan::math::inv_logit<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>, nullptr, nullptr>' requested here
3127 | stan::math::eval(inv_logit(
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Product<Matrix<double, -1, -1, 0, -1, -1>, Matrix<double, -1, 1, 0, -1, 1>, 0>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_logit.hpp:88:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>' requested here
88 | return apply_scalar_unary<inv_logit_fun, T>::apply(x);
| ^
./stanExports_binomial_1par.h:3130:37: note: in instantiation of function template specialization 'stan::math::inv_logit<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, nullptr, nullptr>' requested here
3130 | stan::math::eval(inv_logit(
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_sum_op<double, double>, const Product<Matrix<double, -1, -1, 0, -1, -1>, Matrix<double, -1, 1, 0, -1, 1>, 0>, const Matrix<double, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Phi.hpp:69:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>' requested here
69 | return apply_scalar_unary<Phi_fun, T>::apply(x);
| ^
./stanExports_binomial_1par.h:3139:39: note: in instantiation of function template specialization 'stan::math::Phi<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>, nullptr>' requested here
3139 | stan::math::eval(Phi(
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Product<Matrix<double, -1, -1, 0, -1, -1>, Matrix<double, -1, 1, 0, -1, 1>, 0>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Phi.hpp:69:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>' requested here
69 | return apply_scalar_unary<Phi_fun, T>::apply(x);
| ^
./stanExports_binomial_1par.h:3142:39: note: in instantiation of function template specialization 'stan::math::Phi<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, nullptr>' requested here
3142 | stan::math::eval(Phi(multiply(X_agd_arm, beta_tilde)))),
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
88 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here
88 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-<double, nullptr>' requested here
24 | vi_ = (*this - b).vi_;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value<double>::operator-=' requested here
136 | re_ -= x;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base<stan::math::var_value<double>>::operator-=<int>' requested here
24 | y -= rhs;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract<std::complex<stan::math::var>, int>' requested here
55 | return internal::complex_subtract(x, y);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-<stan::math::var_value<double>, int>' requested here
105 | auto y = log(z + sqrt(z * z - 1));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh<stan::math::var_value<double>>' requested here
94 | return stan::math::internal::complex_acosh(z);
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_abs2_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_abs2_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_abs2_op<double>, const Block<const Block<Block<Matrix<double, -1, -1, 0, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Dot.h:98:31: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>, -1, 1>>' requested here
98 | return numext::real((*this).cwiseAbs2().sum());
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Householder/Householder.h:76:60: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
76 | RealScalar tailSqNorm = size()==1 ? RealScalar(0) : tail.squaredNorm();
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:5: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>' requested here
445 | tridiagonalization_inplace(mat,hCoeffs);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:52: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace_selector<Eigen::Matrix<double, -1, -1>>::run<Eigen::Matrix<double, -1, 1>, Eigen::Matrix<double, -1, 1>>' requested here
430 | tridiagonalization_inplace_selector<MatrixType>::run(mat, diag, subdiag, extractQ);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:13: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, Eigen::Matrix<double, -1, 1>>' requested here
437 | internal::tridiagonalization_inplace(mat, diag, m_subdiag, computeEigenvectors);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: note: in instantiation of function template specialization 'Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1>>::compute<Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
168 | compute(matrix.derived(), options);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:45: note: in instantiation of function template specialization 'Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1>>::SelfAdjointEigenSolver<Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
46 | Eigen::SelfAdjointEigenSolver<matrix_d> solver(Ad);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_abs2_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_conj_product_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_conj_product_op<double> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_conj_product_op<double, double>, const Block<Matrix<double, -1, 1, 0, -1, 1>, -1, 1, false>, const Block<Block<Matrix<double, -1, -1, 0, -1, -1>, -1, 1, true>, -1, 1, false>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Dot.h:37:23: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>>' requested here
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Dot.h:84:55: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:5: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>' requested here
445 | tridiagonalization_inplace(mat,hCoeffs);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:52: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace_selector<Eigen::Matrix<double, -1, -1>>::run<Eigen::Matrix<double, -1, 1>, Eigen::Matrix<double, -1, 1>>' requested here
430 | tridiagonalization_inplace_selector<MatrixType>::run(mat, diag, subdiag, extractQ);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:13: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, Eigen::Matrix<double, -1, 1>>' requested here
437 | internal::tridiagonalization_inplace(mat, diag, m_subdiag, computeEigenvectors);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: note: in instantiation of function template specialization 'Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1>>::compute<Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
168 | compute(matrix.derived(), options);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:45: note: in instantiation of function template specialization 'Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1>>::SelfAdjointEigenSolver<Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
46 | Eigen::SelfAdjointEigenSolver<matrix_d> solver(Ad);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_conj_product_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:28:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
84 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here
84 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+<int, nullptr>' requested here
45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z);
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_sum_op<double, double>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>, const CwiseBinaryOp<scalar_quotient_op<double, int>, const CwiseBinaryOp<scalar_difference_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Array<double, -1, 1, 0, -1, 1>>>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>>' requested here
120 | return apply_scalar_unary<lgamma_fun, T>::apply(x);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:23: note: in instantiation of function template specialization 'stan::math::lgamma<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>, nullptr>' requested here
58 | return result + sum(lgamma(x + (1 - Eigen::ArrayXd::LinSpaced(k, 1, k)) / 2));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:20: note: in instantiation of function template specialization 'stan::math::lmgamma<double, nullptr>' requested here
16 | : op_dv_vari(lmgamma(a, bvi->val_), a, bvi) {}
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:28:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
84 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here
84 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+<double, nullptr>' requested here
63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl<stan::math::var_value<double>>' requested here
23 | inline var trigamma(const var& u) { return trigamma_impl(u); }
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const ArrayWrapper<Block<Block<Matrix<double, -1, -1, 0, -1, -1>, -1, 1, true>, -1, 1, false>>, const CwiseNullaryOp<scalar_constant_op<double>, Array<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:373:58: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>' requested here
373 | ret = ret && (mat.col(j).tail(size-j-1).array()==Scalar(0)).all();
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:42: note: in instantiation of function template specialization 'Eigen::internal::ldlt_inplace<1>::unblocked<Eigen::Matrix<double, -1, -1>, Eigen::Transpositions<-1, -1>, Eigen::Matrix<double, -1, 1>>' requested here
520 | m_info = internal::ldlt_inplace<UpLo>::unblocked(m_matrix, m_transpositions, m_temporary, m_sign) ? Success : NumericalIssue;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:7: note: in instantiation of function template specialization 'Eigen::LDLT<Eigen::Matrix<double, -1, -1>>::compute<Eigen::Matrix<double, -1, -1>>' requested here
112 | compute(matrix.derived());
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10: note: in instantiation of function template specialization 'Eigen::LDLT<Eigen::Matrix<double, -1, -1>>::LDLT<Eigen::Matrix<double, -1, -1>>' requested here
668 | return LDLT<PlainObject>(derived());
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:63: note: in instantiation of member function 'Eigen::MatrixBase<Eigen::Matrix<double, -1, -1>>::ldlt' requested here
45 | Eigen::LDLT<Eigen::MatrixXd> cholesky = value_of_rec(y_ref).ldlt();
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:17: note: in instantiation of function template specialization 'stan::math::check_pos_definite<Eigen::Matrix<double, -1, -1>, nullptr>' requested here
21 | stan::math::check_pos_definite("check_pos_definite", "inv_metric",
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseUnaryOp<scalar_square_op<double>, const CwiseBinaryOp<scalar_product_op<double, double>, const CwiseBinaryOp<scalar_difference_op<double, double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_1par_namespace::model_binomial_1par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_quotient_op<double, double>, const CwiseUnaryOp<scalar_square_op<double>, const CwiseBinaryOp<scalar_quotient_op<double, double>, const CwiseBinaryOp<scalar_difference_op<double, double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_1par_namespace::model_binomial_1par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_cast_op<bool, int> (const bool &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_cast_op<bool, int> (const bool &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_cast_op<bool, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_cast_op<bool, int>, const CwiseBinaryOp<scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, Array<double, -1, 1, 0, -1, 1>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_cast_op<bool, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:510:20: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_cast_op<bool, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>>' requested here
510 | typedef typename _CastType::Scalar NewScalarType;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/../plugins/CommonCwiseUnaryOps.h:48:69: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
48 | template<class NewType> struct CastXpr { typedef typename internal::cast_return_type<Derived,const CwiseUnaryOp<internal::scalar_cast_op<Scalar, NewType>, const Derived> >::type Type; };
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_1par_namespace::model_binomial_1par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_cast_op<bool, int> (const bool &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_quotient_op<double, double>, const CwiseUnaryOp<scalar_square_op<double>, const CwiseBinaryOp<scalar_quotient_op<double, double>, const CwiseBinaryOp<scalar_difference_op<double, double>, const Array<double, -1, 1, 0, -1, 1>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_1par_namespace::model_binomial_1par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const int &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Map<const Eigen::Matrix<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Map<const Matrix<int, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Map<const Eigen::Matrix<int, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Map<const Eigen::Matrix<int, -1, 1>>>' requested here
110 | return m.unaryExpr([](auto x) { return value_of_rec(x); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_1par_namespace::model_binomial_1par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Array<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Array<double, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Array<double, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Array<double, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_1par_namespace::model_binomial_1par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sum_op<double, int> (const double &, const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sum_op<double, int> (const double &, const int &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_sum_op<double, int>, const Array<double, -1, 1, 0, -1, 1>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_lpmf.hpp:87:72: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>' requested here
87 | .select(signs * exp_m_ntheta / (exp_m_ntheta + 1),
| ^
./stanExports_binomial_1par.h:2633:26: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
2633 | lp_accum__.add(bernoulli_logit_lpmf<propto__>(ipd_r, eta_ipd));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_1par_namespace::model_binomial_1par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_sum_op<double, int> (const double &, const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Map<Matrix<var_value<double, void>, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:53: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
145 | arena_t<return_t> res = arena_A.val() * arena_B.val().array();
| ^
./stanExports_binomial_1par.h:1998:49: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
1998 | stan::math::eval(multiply(tau[(1 - 1)],
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<adj_Op, Map<Matrix<var_value<double, void>, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150:36: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
150 | const auto res_adj = res.adj().coeffRef(i, j);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146:27: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
146 | reverse_pass_callback([arena_A, arena_B, res]() mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Map<Matrix<var_value<double, void>, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:53: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
145 | arena_t<return_t> res = arena_A.val() * arena_B.val().array();
| ^
./stanExports_binomial_1par.h:2004:51: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
2004 | multiply(tau[(1 - 1)],
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<adj_Op, Map<Matrix<var_value<double, void>, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150:36: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
150 | const auto res_adj = res.adj().coeffRef(i, j);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146:27: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
146 | reverse_pass_callback([arena_A, arena_B, res]() mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Matrix<var_value<double, void>, -1, -1, 0, -1, -1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>' requested here
58 | return a.unaryExpr([](const auto& scal) { return value_of(scal); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Map<Matrix<var_value<double, void>, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
58 | return a.unaryExpr([](const auto& scal) { return value_of(scal); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
58 | return a.unaryExpr([](const auto& scal) { return value_of(scal); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>> (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>> (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>>, const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_opposite_op<var_value<double, void>>, const CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>>, const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/minus.hpp:18:10: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>>, const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
18 | return -x;
| ^
./stanExports_binomial_1par.h:551:34: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
551 | lp_accum__.add(minus(stan::math::log(y)));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>> (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const ArrayWrapper<const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
58 | return a.unaryExpr([](const auto& scal) { return value_of(scal); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:52:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture]
83 | container_operands_(index_apply<N_containers>([&, this](auto... Is) {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here
83 | container_operands_(index_apply<N_containers>([&, this](auto... Is) {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here
167 | return new precomputed_gradients_vari_template<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &, const double &, const double &>::build' requested here
113 | return ops_partials.build(logp);
| ^
./stanExports_binomial_1par.h:522:24: note: in instantiation of function template specialization 'stan::math::normal_lpdf<false, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, double, double, nullptr>' requested here
522 | lp_accum__.add(normal_lpdf<propto__>(y, location, scale));
| ^
./stanExports_binomial_1par.h:2570:9: note: in instantiation of function template specialization 'model_binomial_1par_namespace::prior_select_lp<false, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, double, double, double, stan::math::var_value<double>, stan::math::accumulator<stan::math::var_value<double>>>' requested here
2570 | prior_select_lp<false>(mu, prior_intercept_dist,
| ^
./stanExports_binomial_1par.h:4005:14: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
4005 | return log_prob_impl<propto__, jacobian__>(params_r, params_i, pstream);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:52:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture]
86 | container_gradients_(index_apply<N_containers>([&, this](auto... Is) {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here
86 | container_gradients_(index_apply<N_containers>([&, this](auto... Is) {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here
167 | return new precomputed_gradients_vari_template<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &, const double &, const double &>::build' requested here
113 | return ops_partials.build(logp);
| ^
./stanExports_binomial_1par.h:522:24: note: in instantiation of function template specialization 'stan::math::normal_lpdf<false, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, double, double, nullptr>' requested here
522 | lp_accum__.add(normal_lpdf<propto__>(y, location, scale));
| ^
./stanExports_binomial_1par.h:2570:9: note: in instantiation of function template specialization 'model_binomial_1par_namespace::prior_select_lp<false, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, double, double, double, stan::math::var_value<double>, stan::math::accumulator<stan::math::var_value<double>>>' requested here
2570 | prior_select_lp<false>(mu, prior_intercept_dist,
| ^
./stanExports_binomial_1par.h:4005:14: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
4005 | return log_prob_impl<propto__, jacobian__>(params_r, params_i, pstream);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseUnaryOp<scalar_square_op<double>, const CwiseBinaryOp<scalar_product_op<double, double>, const Array<double, -1, 1, 0, -1, 1>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>> (const double &, const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>> (const double &, const stan::math::var_value<double> &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<double, var_value<double, void>>, const Matrix<double, -1, 1, 0, -1, 1>, const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:64: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
98 | sum_lp_vec += trace_inv_quad_form_ldlt(ldlt_Sigma, y_col - mu_col);
| ^
./stanExports_binomial_1par.h:2627:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
2627 | multi_normal_lpdf<propto__>(agd_contrast_y, eta_agd_contrast_bar,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>> (const double &, const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture]
113 | [bvi = b.vi_, a](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here
113 | [bvi = b.vi_, a](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:332:128: note: in instantiation of function template specialization 'stan::math::operator-<double, nullptr>' requested here
332 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; }
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:719:12: note: in instantiation of member function 'Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>::operator()' requested here
719 | return m_functor(m_lhsImpl.coeff(index), m_rhsImpl.coeff(index));
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:56: note: in instantiation of member function 'Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::coeff' requested here
637 | m_functor.assignCoeff(m_dst.coeffRef(index), m_src.coeff(index));
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:497:14: note: in instantiation of member function 'Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>, Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>, Eigen::internal::assign_op<stan::math::var_value<double>, stan::math::var_value<double>>>::assignCoeff' requested here
497 | kernel.assignCoeff(i);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:741:34: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
741 | dense_assignment_loop<Kernel>::run(kernel);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_1par_namespace::model_binomial_1par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_1par_namespace::model_binomial_1par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_1par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:59:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
14 | static void set_zero_all_adjoints() {
| ^~~~~~~~~~~~~~~~~~~~~
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:110:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef]
34 | using value_t = value_type_t<EigMat>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:319:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef]
46 | using idx_t = index_type_t<std::vector<T>>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef]
59 | using T_y_val =
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:31:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef]
50 | using T_partials_matrix = Eigen::Matrix<T_partials_return, Eigen::Dynamic, 1>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:37:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
55 | using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:63:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
45 | using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:74:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef]
60 | using T_partials_vec = typename Eigen::Matrix<T_partials_return, -1, 1>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:91:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
44 | using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:111:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
30 | using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:245:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
76 | using T_partials_array = Eigen::Array<T_partials_return, -1, 1>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:277:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef]
62 | using T_alpha_val = typename std::conditional_t<
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:32:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef]
83 | using Block_ = Eigen::Block<Eigen::MatrixXd>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:34:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef]
32 | using T_scalar = value_type_t<T>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:71:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef]
64 | using value_t = value_type_t<VarMat>;
| ^
In file included from stanExports_binomial_1par.cc:5:
In file included from ./stanExports_binomial_1par.h:25:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:8:
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef]
349 | using pair_type = std::pair<int, arena_vec>;
| ^
141 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/gannet/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/rstan/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c stanExports_binomial_2par.cc -o stanExports_binomial_2par.o
In file included from stanExports_binomial_2par.cc:3:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from stanExports_binomial_2par.cc:3:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:540:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/LU:47:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:12:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Jacobi:29:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:43:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/QR:15:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Householder:27:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/QR:48:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SVD:48:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:6:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Geometry:58:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:58:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:66:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:71:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCholesky:43:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:33:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:32:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseQR:34:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:33:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:21:
/data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:48:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
48 | Rprintf("%.*s", n, s);
| ~~^~ ~
/data/gannet/ripley/R/test-clang/rstan/include/rstan/io/r_ostream.hpp:71:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
71 | REprintf("%.*s", n, s);
| ~~^~ ~
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:32:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:36:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
239 | int count = 0;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_cholesky_factor_corr.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_unit_vector.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/abs.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/hypot.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_binary.hpp:9:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable]
33 | bool error = false;
| ^~~~~
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const ArrayWrapper<Diagonal<const Matrix<double, -1, -1, 0, -1, -1>, 0>>, const CwiseNullaryOp<scalar_constant_op<double>, Array<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:38: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>' requested here
47 | || (cholesky.vectorD().array() <= 0.0).any()) {
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const ArrayWrapper<Diagonal<const Matrix<double, -1, -1, 0, -1, -1>, 0>>, const CwiseNullaryOp<scalar_constant_op<double>, Array<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_pos_semidefinite.hpp:46:38: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>' requested here
46 | || (cholesky.vectorD().array() < 0.0).any()) {
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err.hpp:50:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable]
33 | int n_transitions = log_omegas.cols() - 1;
| ^~~~~~~~~~~~~
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:118:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable]
275 | double neg_root_5 = -root_5;
| ^~~~~~~~~~
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_difference_op<int, double> (const int &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_difference_op<int, double> (const int &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Array<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:37: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>' requested here
58 | return result + sum(lgamma(x + (1 - Eigen::ArrayXd::LinSpaced(k, 1, k)) / 2));
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_difference_op<int, double> (const int &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_quotient_op<double, int> (const double &, const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_quotient_op<double, int> (const double &, const int &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_quotient_op<double, int>, const CwiseBinaryOp<scalar_difference_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Array<double, -1, 1, 0, -1, 1>>>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:75: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>' requested here
58 | return result + sum(lgamma(x + (1 - Eigen::ArrayXd::LinSpaced(k, 1, k)) / 2));
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_quotient_op<double, int> (const double &, const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:183:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable]
86 | const int N = stan::math::size(theta);
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1>>, const Eigen::Matrix<double, -1, -1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_product_op<double, double>, const CwiseNullaryOp<scalar_constant_op<double>, const Matrix<double, -1, -1, 0, -1, -1>>, const Matrix<double, -1, -1, 0, -1, -1>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1>>, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:19: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1>>, const Eigen::Matrix<double, -1, -1>>' requested here
71 | B = t * A * B / (s * j);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_product_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_difference_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_difference_op<double> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<double, double>, const Matrix<double, -1, 1, 0, -1, 1>, const Matrix<double, -1, 1, 0, -1, 1>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:26:29: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>>' requested here
26 | Eigen::VectorXd delta(q - m_);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_difference_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_quotient_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_quotient_op<double> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_quotient_op<double, double>, const Matrix<double, -1, 1, 0, -1, 1>, const CwiseNullaryOp<scalar_constant_op<double>, const Matrix<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:27:17: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1>>>' requested here
27 | m_ += delta / num_samples_;
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_quotient_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/gannet/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:197:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
197 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_exp_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_exp_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_exp_op<double>, const CwiseBinaryOp<scalar_difference_op<double, double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:90:49: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>' requested here
90 | return max + std::log((v_ref.array() - max).exp().sum());
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:103:12: note: in instantiation of function template specialization 'stan::math::log_sum_exp(const Eigen::Matrix<double, -1, 1> &)::(anonymous class)::operator()<Eigen::Matrix<double, -1, 1>>' requested here
103 | return f(x);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:81:33: note: in instantiation of function template specialization 'stan::math::apply_vector_unary<Eigen::Matrix<double, -1, 1>>::reduce<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:81:43)>' requested here
81 | return apply_vector_unary<T>::reduce(x, [&](const auto& v) {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:24: note: in instantiation of function template specialization 'stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1>, nullptr>' requested here
59 | double log_sum_y = log_sum_exp(log_y);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_exp_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:87:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable]
82 | size_t N = max_size(y, mu, sigma);
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sqrt_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sqrt_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_sqrt_op<double>, const ArrayWrapper<Diagonal<const Matrix<double, -1, -1, 0, -1, -1>, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:38:53: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>' requested here
38 | Eigen::VectorXd stddev = S_ldlt.vectorD().array().sqrt().matrix();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_sqrt_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sum_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sum_op<double> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1>>>, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>>, 2>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_sum_op<double, double>, const Matrix<double, -1, 1, 0, -1, 1>, const Product<Transpose<TranspositionsBase<Transpositions<-1, -1, int>>>, Product<TriangularView<const Matrix<double, -1, -1, 0, -1, -1>, 5>, Matrix<double, -1, 1, 0, -1, 1>, 0>, 2>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1>>>, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>>, 2>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:46:12: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1>>>, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>>, 2>>' requested here
46 | = mu + (S_ldlt.transpositionsP().transpose() * (S_ldlt.matrixL() * z));
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_sum_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:128:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable]
98 | int n = G.rows(); // number of states
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:139:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable]
26 | const int n_states = omegas.rows();
| ^~~~~~~~
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_inverse_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_inverse_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_inverse_op<double>, const ArrayWrapper<Diagonal<const Matrix<double, -1, -1, 0, -1, -1>, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:89:38: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>' requested here
89 | = Sigma_ldlt.vectorD().array().inverse().sqrt().matrix();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_inverse_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sum_op<int> (const int &, const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sum_op<int> (const int &, const int &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_sum_op<int, int>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const Map<const Array<int, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/multinomial_logit_lpmf.hpp:39:47: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>' requested here
39 | lp += lgamma(1 + ns_map.sum()) - lgamma(1 + ns_map).sum();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_sum_op<int> (const int &, const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const int &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_sum_op<int, int>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const Map<const Array<int, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>>' requested here
120 | return apply_scalar_unary<lgamma_fun, T>::apply(x);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/multinomial_logit_lpmf.hpp:39:38: note: in instantiation of function template specialization 'stan::math::lgamma<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Map<const Eigen::Array<int, -1, 1>>>, nullptr>' requested here
39 | lp += lgamma(1 + ns_map.sum()) - lgamma(1 + ns_map).sum();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_opposite_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_opposite_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_opposite_op<double>, const Array<double, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:29: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1>>' requested here
130 | = (cut1 > 0.0).select(-cut1, 0) - (-cut1.abs()).exp().log1p();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_opposite_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_abs_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_abs_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_abs_op<double>, const Array<double, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:48: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>>' requested here
130 | = (cut1 > 0.0).select(-cut1, 0) - (-cut1.abs()).exp().log1p();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_abs_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_log1p_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_log1p_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_log1p_op<double>, const CwiseUnaryOp<scalar_exp_op<double>, const CwiseUnaryOp<scalar_opposite_op<double>, const CwiseUnaryOp<scalar_abs_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:130:61: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_log1p_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
130 | = (cut1 > 0.0).select(-cut1, 0) - (-cut1.abs()).exp().log1p();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_log1p_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ> (const int &, const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ> (const int &, const int &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Map<const Matrix<int, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>, const CwiseNullaryOp<scalar_constant_op<int>, Matrix<int, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:138:18: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ>, const Eigen::Map<const Eigen::Matrix<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1>>>' requested here
138 | logp = y_vec.cwiseEqual(1)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_cmp_op<int, int, Eigen::internal::cmp_EQ> (const int &, const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_difference_op<double, double>, const Array<double, -1, 1, 0, -1, 1>, const Array<double, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log1m_exp.hpp:83:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::log1m_exp_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>>' requested here
83 | return apply_scalar_unary<log1m_exp_fun, T>::apply(x);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:142:50: note: in instantiation of function template specialization 'stan::math::log1m_exp<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>>, nullptr>' requested here
142 | m_log_1p_exp_m_cut2 + log1m_exp(cut1 - cut2).array()
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sum_op<int, double> (const int &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sum_op<int, double> (const int &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_sum_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const Array<double, -1, 1, 0, -1, 1>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:164:45: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>>' requested here
164 | = (cut2 > 0).select(exp_m_cut2 / (1 + exp_m_cut2), 1 / (1 + exp(cut2)))
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_sum_op<int, double> (const int &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_difference_op<double, int> (const double &, const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_difference_op<double, int> (const double &, const int &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<double, int>, const Array<double, -1, 1, 0, -1, 1>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:165:44: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>' requested here
165 | - exp_cuts_diff / (exp_cuts_diff - 1);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_difference_op<double, int> (const double &, const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_quotient_op<int, double> (const int &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_quotient_op<int, double> (const int &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_quotient_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const CwiseBinaryOp<scalar_difference_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const Array<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp:167:13: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::Array<double, -1, 1>>>' requested here
167 | = 1 / (1 - exp_cuts_diff)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_quotient_op<int, double> (const int &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:315:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable]
23 | static const char* function = "std_normal_rng";
| ^~~~~~~~
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:335:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable]
72 | double ck = 50;
| ^~
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op (stan::math::vari_value<double> *const &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op (stan::math::vari_value<double> *const &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<adj_Op, Map<Matrix<vari_value<double, void> *, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/divide.hpp:40:31: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>' requested here
40 | -= invc_ * (adjResult.adj().array() * adjResult.val().array()).sum();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::adj_Op (stan::math::vari_value<double> *const &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op (stan::math::vari_value<double> *const &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op (stan::math::vari_value<double> *const &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Map<Matrix<vari_value<double, void> *, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/divide.hpp:40:57: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>' requested here
40 | -= invc_ * (adjResult.adj().array() * adjResult.val().array()).sum();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, -1>>>::val_Op (stan::math::vari_value<double> *const &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<val_Op, const Matrix<var_value<double, void>, -1, -1, 0, -1, -1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:45:12: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>' requested here
45 | Ad = A.val();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::val_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<vi_Op, const Matrix<var_value<double, void>, -1, -1, 0, -1, -1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:50:45: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op, const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>' requested here
50 | Map<matrix_vi>(vari_ref_A_, M_, M_) = A.vi();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>::vi_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24), const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
52 | = wd.unaryExpr([](double x) { return new vari(x, false); });
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:52:24) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Matrix<var_value<double, void>, -1, -1, 0, -1, -1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>' requested here
110 | return m.unaryExpr([](auto x) { return value_of_rec(x); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: in instantiation of function template specialization 'stan::math::value_of_rec(const Eigen::Matrix<stan::math::var_value<double>, -1, -1> &)::(anonymous class)::operator()<const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>' requested here
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:365:6: note: while substituting prior template arguments into non-type template parameter [with F = (lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:109:7), Args = <const Eigen::Matrix<stan::math::var_value<double>, -1, -1> &>]
365 | auto make_holder(const F& func, Args&&... args) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
366 | return internal::make_holder_impl(func,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
367 | std::make_index_sequence<sizeof...(Args)>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
368 | std::forward<Args>(args)...);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
369 | }
| ~
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:108:10: note: while substituting deduced template arguments into function template 'make_holder' [with F = (lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:109:7), Args = <const Eigen::Matrix<stan::math::var_value<double>, -1, -1> &>, $2 = (no value)]
108 | return make_holder(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:83:19: note: in instantiation of function template specialization 'stan::math::value_of_rec<const Eigen::Matrix<stan::math::var_value<double>, -1, -1> &, void, void>' requested here
83 | matrix_d m_eval(value_of_rec(m));
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<vi_Op, Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:88:7: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
88 | res.vi()
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::vi_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24), const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24), const Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
52 | = vd.unaryExpr([](double x) { return new vari(x, false); });
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvectors_sym.hpp:52:24) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<adj_Op, Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/grad.hpp:27:9: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
27 | g = x.adj();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::adj_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_log_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_log_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_log_op<double>, const ArrayWrapper<const Diagonal<const Matrix<double, -1, -1, 0, -1, -1>, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log.hpp:66:47: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>>' requested here
66 | x, [](const auto& v) { return v.array().log(); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:48:24: note: in instantiation of function template specialization 'stan::math::log(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>> &)::(anonymous class)::operator()<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>' requested here
48 | f(x));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log.hpp:65:41: note: in instantiation of function template specialization 'stan::math::apply_vector_unary<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>>::apply<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/log.hpp:66:10), Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>, nullptr>' requested here
65 | return apply_vector_unary<Container>::apply(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:20: note: in instantiation of function template specialization 'stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>>, nullptr>' requested here
49 | double val = sum(log(ldlt.vectorD()));
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_log_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op (stan::math::vari_value<double> *const &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op (stan::math::vari_value<double> *const &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Map<Matrix<vari_value<double, void> *, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:38: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>' requested here
79 | vector_d di = 2 * adj_ * (v1_map.val() - v2_map.val());
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::val_Op (stan::math::vari_value<double> *const &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op (stan::math::vari_value<double> *const &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op (stan::math::vari_value<double> *const &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<adj_Op, Map<Matrix<vari_value<double, void> *, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:80:12: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>' requested here
80 | v1_map.adj() += di;
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double> *, -1, 1>>>::adj_Op (stan::math::vari_value<double> *const &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<vi_Op, Map<const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/variance.hpp:22:49: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
22 | Eigen::Map<vector_vi>(varis, size) = dtrs_map.vi();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::vi_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Map<const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/variance.hpp:23:33: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
23 | vector_d dtrs_vals = dtrs_map.val();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_product_op<int, double> (const int &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_product_op<int, double> (const int &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_product_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const ArrayWrapper<Matrix<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/variance.hpp:27:44: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1>>>' requested here
27 | Eigen::Map<vector_d>(partials, size) = 2 * diff.array() / size_m1;
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_product_op<int, double> (const int &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/jacobian.hpp:26:15: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
26 | fx = fx_var.val();
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>::val_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
58 | return a.unaryExpr([](const auto& scal) { return value_of(scal); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: in instantiation of function template specialization 'stan::math::value_of(const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &)::(anonymous class)::operator()<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:365:6: note: while substituting prior template arguments into non-type template parameter [with F = (lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:57:7), Args = <const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &>]
365 | auto make_holder(const F& func, Args&&... args) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
366 | return internal::make_holder_impl(func,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
367 | std::make_index_sequence<sizeof...(Args)>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
368 | std::forward<Args>(args)...);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
369 | }
| ~
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:56:10: note: while substituting deduced template arguments into function template 'make_holder' [with F = (lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:57:7), Args = <const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &>, $2 = (no value)]
56 | return make_holder(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/algebra_solver_fp.hpp:96:29: note: in instantiation of function template specialization 'stan::math::value_of<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &, nullptr, nullptr>' requested here
96 | y_dummy(stan::math::value_of(y)),
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_square_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_square_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_square_op<double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:182:56: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>>' requested here
182 | return normal_fullrank(Eigen::VectorXd(mu_.array().square()),
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_square_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
1252 | int ret = stan::services::error_codes::CONFIG;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:25:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:9:
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable]
610 | const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols());
| ^~~~
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:25:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:10:
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable]
241 | const Eigen::Index x_cols = x.cols();
| ^~~~~~
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<double, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_logit.hpp:88:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Matrix<double, -1, 1>>' requested here
88 | return apply_scalar_unary<inv_logit_fun, T>::apply(x);
| ^
./stanExports_binomial_2par.h:3088:45: note: in instantiation of function template specialization 'stan::math::inv_logit<Eigen::Matrix<double, -1, 1>, nullptr, nullptr>' requested here
3088 | assign(theta_ipd, nil_index_list(), inv_logit(eta_ipd),
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<double, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<double, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::Matrix<double, -1, 1>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Phi.hpp:69:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::Matrix<double, -1, 1>>' requested here
69 | return apply_scalar_unary<Phi_fun, T>::apply(x);
| ^
./stanExports_binomial_2par.h:3094:47: note: in instantiation of function template specialization 'stan::math::Phi<Eigen::Matrix<double, -1, 1>, nullptr>' requested here
3094 | assign(theta_ipd, nil_index_list(), Phi(eta_ipd),
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const MatrixWrapper<const CwiseBinaryOp<scalar_sum_op<double, double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_logit.hpp:88:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
88 | return apply_scalar_unary<inv_logit_fun, T>::apply(x);
| ^
./stanExports_binomial_2par.h:3138:21: note: in instantiation of function template specialization 'stan::math::inv_logit<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, nullptr, nullptr>' requested here
3138 | inv_logit(
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const MatrixWrapper<const CwiseBinaryOp<scalar_sum_op<double, double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Phi.hpp:69:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
69 | return apply_scalar_unary<Phi_fun, T>::apply(x);
| ^
./stanExports_binomial_2par.h:3171:23: note: in instantiation of function template specialization 'stan::math::Phi<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, nullptr>' requested here
3171 | Phi(
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_sum_op<double, double>, const Product<Matrix<double, -1, -1, 0, -1, -1>, Matrix<double, -1, 1, 0, -1, 1>, 0>, const Matrix<double, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_logit.hpp:88:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>' requested here
88 | return apply_scalar_unary<inv_logit_fun, T>::apply(x);
| ^
./stanExports_binomial_2par.h:3237:37: note: in instantiation of function template specialization 'stan::math::inv_logit<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>, nullptr, nullptr>' requested here
3237 | stan::math::eval(inv_logit(
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Product<Matrix<double, -1, -1, 0, -1, -1>, Matrix<double, -1, 1, 0, -1, 1>, 0>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/inv_logit.hpp:88:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>' requested here
88 | return apply_scalar_unary<inv_logit_fun, T>::apply(x);
| ^
./stanExports_binomial_2par.h:3240:37: note: in instantiation of function template specialization 'stan::math::inv_logit<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, nullptr, nullptr>' requested here
3240 | stan::math::eval(inv_logit(
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_sum_op<double, double>, const Product<Matrix<double, -1, -1, 0, -1, -1>, Matrix<double, -1, 1, 0, -1, 1>, 0>, const Matrix<double, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Phi.hpp:69:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>>' requested here
69 | return apply_scalar_unary<Phi_fun, T>::apply(x);
| ^
./stanExports_binomial_2par.h:3249:39: note: in instantiation of function template specialization 'stan::math::Phi<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, const Eigen::Matrix<double, -1, 1>>, nullptr>' requested here
3249 | stan::math::eval(Phi(
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Product<Matrix<double, -1, -1, 0, -1, -1>, Matrix<double, -1, 1, 0, -1, 1>, 0>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Phi.hpp:69:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::Phi_fun, Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>>' requested here
69 | return apply_scalar_unary<Phi_fun, T>::apply(x);
| ^
./stanExports_binomial_2par.h:3252:39: note: in instantiation of function template specialization 'stan::math::Phi<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>, nullptr>' requested here
3252 | stan::math::eval(Phi(multiply(X_agd_arm, beta_tilde)))),
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
88 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here
88 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-<double, nullptr>' requested here
24 | vi_ = (*this - b).vi_;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value<double>::operator-=' requested here
136 | re_ -= x;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base<stan::math::var_value<double>>::operator-=<int>' requested here
24 | y -= rhs;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract<std::complex<stan::math::var>, int>' requested here
55 | return internal::complex_subtract(x, y);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-<stan::math::var_value<double>, int>' requested here
105 | auto y = log(z + sqrt(z * z - 1));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh<stan::math::var_value<double>>' requested here
94 | return stan::math::internal::complex_acosh(z);
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_abs2_op<double> (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_abs2_op<double> (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_abs2_op<double>, const Block<const Block<Block<Matrix<double, -1, -1, 0, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Dot.h:98:31: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>, -1, 1>>' requested here
98 | return numext::real((*this).cwiseAbs2().sum());
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Householder/Householder.h:76:60: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
76 | RealScalar tailSqNorm = size()==1 ? RealScalar(0) : tail.squaredNorm();
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:5: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>' requested here
445 | tridiagonalization_inplace(mat,hCoeffs);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:52: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace_selector<Eigen::Matrix<double, -1, -1>>::run<Eigen::Matrix<double, -1, 1>, Eigen::Matrix<double, -1, 1>>' requested here
430 | tridiagonalization_inplace_selector<MatrixType>::run(mat, diag, subdiag, extractQ);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:13: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, Eigen::Matrix<double, -1, 1>>' requested here
437 | internal::tridiagonalization_inplace(mat, diag, m_subdiag, computeEigenvectors);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: note: in instantiation of function template specialization 'Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1>>::compute<Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
168 | compute(matrix.derived(), options);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:45: note: in instantiation of function template specialization 'Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1>>::SelfAdjointEigenSolver<Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
46 | Eigen::SelfAdjointEigenSolver<matrix_d> solver(Ad);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_abs2_op<double> (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_conj_product_op<double> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_conj_product_op<double> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_conj_product_op<double, double>, const Block<Matrix<double, -1, 1, 0, -1, 1>, -1, 1, false>, const Block<Block<Matrix<double, -1, -1, 0, -1, -1>, -1, 1, true>, -1, 1, false>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Dot.h:37:23: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>>' requested here
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Dot.h:84:55: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:5: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>>' requested here
445 | tridiagonalization_inplace(mat,hCoeffs);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:52: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace_selector<Eigen::Matrix<double, -1, -1>>::run<Eigen::Matrix<double, -1, 1>, Eigen::Matrix<double, -1, 1>>' requested here
430 | tridiagonalization_inplace_selector<MatrixType>::run(mat, diag, subdiag, extractQ);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:13: note: in instantiation of function template specialization 'Eigen::internal::tridiagonalization_inplace<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, Eigen::Matrix<double, -1, 1>>' requested here
437 | internal::tridiagonalization_inplace(mat, diag, m_subdiag, computeEigenvectors);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: note: in instantiation of function template specialization 'Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1>>::compute<Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
168 | compute(matrix.derived(), options);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/eigenvalues_sym.hpp:46:45: note: in instantiation of function template specialization 'Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1>>::SelfAdjointEigenSolver<Eigen::Map<Eigen::Matrix<double, -1, -1>>>' requested here
46 | Eigen::SelfAdjointEigenSolver<matrix_d> solver(Ad);
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_conj_product_op<double> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:28:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
84 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here
84 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+<int, nullptr>' requested here
45 | grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z);
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_sum_op<double, double>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>, const CwiseBinaryOp<scalar_quotient_op<double, int>, const CwiseBinaryOp<scalar_difference_op<int, double>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Array<double, -1, 1, 0, -1, 1>>>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: in instantiation of member function 'stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>>::apply' requested here
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:10: note: in instantiation of template class 'stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>>' requested here
120 | return apply_scalar_unary<lgamma_fun, T>::apply(x);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:23: note: in instantiation of function template specialization 'stan::math::lgamma<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double, __attribute__((__vector_size__(2 * sizeof(double)))) double>, Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>, nullptr>' requested here
58 | return result + sum(lgamma(x + (1 - Eigen::ArrayXd::LinSpaced(k, 1, k)) / 2));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:20: note: in instantiation of function template specialization 'stan::math::lmgamma<double, nullptr>' requested here
16 | : op_dv_vari(lmgamma(a, bvi->val_), a, bvi) {}
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:28:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
84 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:29: note: while substituting into a lambda expression here
84 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+<double, nullptr>' requested here
63 | value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl<stan::math::var_value<double>>' requested here
23 | inline var trigamma(const var& u) { return trigamma_impl(u); }
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ> (const double &, const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ> (const double &, const double &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const ArrayWrapper<Block<Block<Matrix<double, -1, -1, 0, -1, -1>, -1, 1, true>, -1, 1, false>>, const CwiseNullaryOp<scalar_constant_op<double>, Array<double, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:373:58: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>' requested here
373 | ret = ret && (mat.col(j).tail(size-j-1).array()==Scalar(0)).all();
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:520:42: note: in instantiation of function template specialization 'Eigen::internal::ldlt_inplace<1>::unblocked<Eigen::Matrix<double, -1, -1>, Eigen::Transpositions<-1, -1>, Eigen::Matrix<double, -1, 1>>' requested here
520 | m_info = internal::ldlt_inplace<UpLo>::unblocked(m_matrix, m_transpositions, m_temporary, m_sign) ? Success : NumericalIssue;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:7: note: in instantiation of function template specialization 'Eigen::LDLT<Eigen::Matrix<double, -1, -1>>::compute<Eigen::Matrix<double, -1, -1>>' requested here
112 | compute(matrix.derived());
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:668:10: note: in instantiation of function template specialization 'Eigen::LDLT<Eigen::Matrix<double, -1, -1>>::LDLT<Eigen::Matrix<double, -1, -1>>' requested here
668 | return LDLT<PlainObject>(derived());
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:63: note: in instantiation of member function 'Eigen::MatrixBase<Eigen::Matrix<double, -1, -1>>::ldlt' requested here
45 | Eigen::LDLT<Eigen::MatrixXd> cholesky = value_of_rec(y_ref).ldlt();
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:17: note: in instantiation of function template specialization 'stan::math::check_pos_definite<Eigen::Matrix<double, -1, -1>, nullptr>' requested here
21 | stan::math::check_pos_definite("check_pos_definite", "inv_metric",
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ> (const double &, const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseUnaryOp<scalar_square_op<double>, const CwiseBinaryOp<scalar_product_op<double, double>, const CwiseBinaryOp<scalar_difference_op<double, double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_2par_namespace::model_binomial_2par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_quotient_op<double, double>, const CwiseUnaryOp<scalar_square_op<double>, const CwiseBinaryOp<scalar_quotient_op<double, double>, const CwiseBinaryOp<scalar_difference_op<double, double>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_2par_namespace::model_binomial_2par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_cast_op<bool, int> (const bool &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_cast_op<bool, int> (const bool &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_cast_op<bool, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_cast_op<bool, int>, const CwiseBinaryOp<scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const ArrayWrapper<const Matrix<double, -1, 1, 0, -1, 1>>, const CwiseNullaryOp<scalar_constant_op<double>, Array<double, -1, 1, 0, -1, 1>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_cast_op<bool, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:510:20: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_cast_op<bool, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1>>>>' requested here
510 | typedef typename _CastType::Scalar NewScalarType;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/../plugins/CommonCwiseUnaryOps.h:48:69: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
48 | template<class NewType> struct CastXpr { typedef typename internal::cast_return_type<Derived,const CwiseUnaryOp<internal::scalar_cast_op<Scalar, NewType>, const Derived> >::type Type; };
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_2par_namespace::model_binomial_2par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_cast_op<bool, int> (const bool &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseBinaryOp<scalar_quotient_op<double, double>, const CwiseUnaryOp<scalar_square_op<double>, const CwiseBinaryOp<scalar_quotient_op<double, double>, const CwiseBinaryOp<scalar_difference_op<double, double>, const Array<double, -1, 1, 0, -1, 1>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_2par_namespace::model_binomial_2par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const int &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Map<const Eigen::Matrix<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Map<const Matrix<int, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Map<const Eigen::Matrix<int, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28), const Eigen::Map<const Eigen::Matrix<int, -1, 1>>>' requested here
110 | return m.unaryExpr([](auto x) { return value_of_rec(x); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_2par_namespace::model_binomial_2par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:28) (const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Array<double, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Array<double, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Array<double, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Array<double, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_2par_namespace::model_binomial_2par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sum_op<double, int> (const double &, const int &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sum_op<double, int> (const double &, const int &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_sum_op<double, int>, const Array<double, -1, 1, 0, -1, 1>, const CwiseNullaryOp<scalar_constant_op<int>, const Array<int, -1, 1, 0, -1, 1>>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_lpmf.hpp:87:72: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1>>>' requested here
87 | .select(signs * exp_m_ntheta / (exp_m_ntheta + 1),
| ^
./stanExports_binomial_2par.h:2739:26: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
2739 | lp_accum__.add(bernoulli_logit_lpmf<propto__>(ipd_r, eta_ipd));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:128:33: note: in instantiation of function template specialization 'model_binomial_2par_namespace::model_binomial_2par::log_prob<false, true, double>' requested here
128 | log_prob = model.template log_prob<false, Jacobian>(unconstrained,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_sum_op<double, int> (const double &, const int &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Map<Matrix<var_value<double, void>, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:53: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
145 | arena_t<return_t> res = arena_A.val() * arena_B.val().array();
| ^
./stanExports_binomial_2par.h:2046:49: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
2046 | stan::math::eval(multiply(tau[(1 - 1)],
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::val_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<adj_Op, Map<Matrix<var_value<double, void>, -1, 1, 0, -1, 1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150:36: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
150 | const auto res_adj = res.adj().coeffRef(i, j);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146:27: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
146 | reverse_pass_callback([arena_A, arena_B, res]() mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::adj_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<val_Op, Map<Matrix<var_value<double, void>, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145:53: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
145 | arena_t<return_t> res = arena_A.val() * arena_B.val().array();
| ^
./stanExports_binomial_2par.h:2052:51: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
2052 | multiply(tau[(1 - 1)],
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::val_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:20:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op (const stan::math::var_value<double> &)>' requested here
20 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:479:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>>' requested here
479 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:102:22: note: in instantiation of default argument for 'dense_xpr_base<CwiseUnaryView<adj_Op, Map<Matrix<var_value<double, void>, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
102 | : public internal::dense_xpr_base< CwiseUnaryView<ViewOp, MatrixType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:31: note: in instantiation of template class 'Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>, Eigen::Dense>' requested here
58 | class CwiseUnaryView : public CwiseUnaryViewImpl<ViewOp, MatrixType, typename internal::traits<MatrixType>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150:36: note: in instantiation of template class 'Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
150 | const auto res_adj = res.adj().coeffRef(i, j);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146:27: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
146 | reverse_pass_callback([arena_A, arena_B, res]() mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>::adj_Op (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Matrix<var_value<double, void>, -1, -1, 0, -1, -1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Matrix<stan::math::var_value<double>, -1, -1>>' requested here
58 | return a.unaryExpr([](const auto& scal) { return value_of(scal); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Map<Matrix<var_value<double, void>, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>>>' requested here
58 | return a.unaryExpr([](const auto& scal) { return value_of(scal); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
58 | return a.unaryExpr([](const auto& scal) { return value_of(scal); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>> (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>> (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>>, const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_opposite_op<var_value<double, void>>, const CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>>, const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/minus.hpp:18:10: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>>, const Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
18 | return -x;
| ^
./stanExports_binomial_2par.h:572:34: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
572 | lp_accum__.add(minus(stan::math::log(y)));
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_opposite_op<stan::math::var_value<double>> (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const ArrayWrapper<const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28), const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
58 | return a.unaryExpr([](const auto& scal) { return value_of(scal); });
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/meta/holder.hpp:364:24: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
364 | decltype(std::declval<F>()(std::declval<Args&>()...))>* = nullptr>
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/value_of.hpp:58:28) (const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:52:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture]
83 | container_operands_(index_apply<N_containers>([&, this](auto... Is) {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:55: note: while substituting into a lambda expression here
83 | container_operands_(index_apply<N_containers>([&, this](auto... Is) {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here
167 | return new precomputed_gradients_vari_template<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &, const double &, const double &>::build' requested here
113 | return ops_partials.build(logp);
| ^
./stanExports_binomial_2par.h:543:24: note: in instantiation of function template specialization 'stan::math::normal_lpdf<false, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, double, double, nullptr>' requested here
543 | lp_accum__.add(normal_lpdf<propto__>(y, location, scale));
| ^
./stanExports_binomial_2par.h:2676:9: note: in instantiation of function template specialization 'model_binomial_2par_namespace::prior_select_lp<false, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, double, double, double, stan::math::var_value<double>, stan::math::accumulator<stan::math::var_value<double>>>' requested here
2676 | prior_select_lp<false>(mu, prior_intercept_dist,
| ^
./stanExports_binomial_2par.h:4255:14: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
4255 | return log_prob_impl<propto__, jacobian__>(params_r, params_i, pstream);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:52:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture]
86 | container_gradients_(index_apply<N_containers>([&, this](auto... Is) {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:56: note: while substituting into a lambda expression here
86 | container_gradients_(index_apply<N_containers>([&, this](auto... Is) {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here
167 | return new precomputed_gradients_vari_template<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:113:23: note: in instantiation of member function 'stan::math::operands_and_partials<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> &, const double &, const double &>::build' requested here
113 | return ops_partials.build(logp);
| ^
./stanExports_binomial_2par.h:543:24: note: in instantiation of function template specialization 'stan::math::normal_lpdf<false, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, double, double, nullptr>' requested here
543 | lp_accum__.add(normal_lpdf<propto__>(y, location, scale));
| ^
./stanExports_binomial_2par.h:2676:9: note: in instantiation of function template specialization 'model_binomial_2par_namespace::prior_select_lp<false, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, double, double, double, stan::math::var_value<double>, stan::math::accumulator<stan::math::var_value<double>>>' requested here
2676 | prior_select_lp<false>(mu, prior_intercept_dist,
| ^
./stanExports_binomial_2par.h:4255:14: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
4255 | return log_prob_impl<propto__, jacobian__>(params_r, params_i, pstream);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' requested here
21 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const CwiseUnaryOp<scalar_square_op<double>, const CwiseBinaryOp<scalar_product_op<double, double>, const Array<double, -1, 1, 0, -1, 1>, const CwiseNullaryOp<scalar_constant_op<double>, const Array<double, -1, 1, 0, -1, 1>>>>>>' required here
95 | : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>, Eigen::Dense>' requested here
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:70:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9), const Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1>>>>>' requested here
70 | return x.unaryExpr(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:87:33: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
87 | apply_scalar_unary<F, T>::apply(std::declval<T>()))>;
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<(lambda at /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:71:9) (const double &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:367:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>> (const double &, const stan::math::var_value<double> &)>' is deprecated [-Wdeprecated-declarations]
320 | typedef typename std::result_of<T>::type type1;
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>> (const double &, const stan::math::var_value<double> &)>' requested here
33 | typedef typename result_of<
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>' requested here
497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_difference_op<double, var_value<double, void>>, const Matrix<double, -1, 1, 0, -1, 1>, const Matrix<var_value<double, void>, -1, 1, 0, -1, 1>>>' required here
149 | : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>' requested here
78 | public CwiseBinaryOpImpl<
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/multi_normal_lpdf.hpp:98:64: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>' requested here
98 | sum_lp_vec += trace_inv_quad_form_ldlt(ldlt_Sigma, y_col - mu_col);
| ^
./stanExports_binomial_2par.h:2733:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
2733 | multi_normal_lpdf<propto__>(agd_contrast_y, eta_agd_contrast_bar,
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
/usr/local/clang17/bin/../include/c++/v1/__type_traits/result_of.h:25:7: note: 'result_of<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>> (const double &, const stan::math::var_value<double> &)>' has been explicitly marked deprecated here
25 | class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:983:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
983 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang17/bin/../include/c++/v1/__config:956:49: note: expanded from macro '_LIBCPP_DEPRECATED'
956 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture]
113 | [bvi = b.vi_, a](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:29: note: while substituting into a lambda expression here
113 | [bvi = b.vi_, a](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:332:128: note: in instantiation of function template specialization 'stan::math::operator-<double, nullptr>' requested here
332 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; }
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:719:12: note: in instantiation of member function 'Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>::operator()' requested here
719 | return m_functor(m_lhsImpl.coeff(index), m_rhsImpl.coeff(index));
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:56: note: in instantiation of member function 'Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>::coeff' requested here
637 | m_functor.assignCoeff(m_dst.coeffRef(index), m_src.coeff(index));
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:497:14: note: in instantiation of member function 'Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>, Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, stan::math::var_value<double>>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>>>, Eigen::internal::assign_op<stan::math::var_value<double>, stan::math::var_value<double>>>::assignCoeff' requested here
497 | kernel.assignCoeff(i);
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:741:34: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
741 | dense_assignment_loop<Kernel>::run(kernel);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:29:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture]
88 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:29: note: while substituting into a lambda expression here
88 | [avi = a.vi_, b](const auto& vi) mutable {
| ^
./stanExports_binomial_2par.h:2750:33: note: in instantiation of function template specialization 'stan::math::operator-<int, nullptr>' requested here
2750 | ((nprime[(i - 1)] - agd_arm_r[(i - 1)]) *
| ^
./stanExports_binomial_2par.h:4255:14: note: in instantiation of function template specialization 'model_binomial_2par_namespace::model_binomial_2par::log_prob_impl<true, true, std::vector<stan::math::var_value<double>>, std::vector<int>, nullptr, nullptr>' requested here
4255 | return log_prob_impl<propto__, jacobian__>(params_r, params_i, pstream);
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_binomial_2par_namespace::model_binomial_2par::log_prob<true, true, stan::math::var_value<double>>' requested here
40 | var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_binomial_2par_namespace::model_binomial_2par>' requested here
166 | log_prob = stan::model::log_prob_grad<true, Jacobian>(
| ^
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
49 | std::vector<double> cont_vector = util::initialize(
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_binomial_2par_namespace::model_binomial_2par>' requested here
481 | return_code = stan::services::diagnose::diagnose(model,
| ^
/data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here
1215 | ret = command(args, model_, holder, names_oi_tidx_,
| ^
stanExports_binomial_2par.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_binomial_2par_namespace::model_binomial_2par, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here
15 | .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler)
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:48:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_base.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:59:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
14 | static void set_zero_all_adjoints() {
| ^~~~~~~~~~~~~~~~~~~~~
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:110:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef]
34 | using value_t = value_type_t<EigMat>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun.hpp:319:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef]
46 | using idx_t = index_type_t<std::vector<T>>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef]
59 | using T_y_val =
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:31:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef]
50 | using T_partials_matrix = Eigen::Matrix<T_partials_return, Eigen::Dynamic, 1>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:37:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
55 | using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:63:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
45 | using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:74:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef]
60 | using T_partials_vec = typename Eigen::Matrix<T_partials_return, -1, 1>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:91:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
44 | using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:111:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
30 | using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:245:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef]
76 | using T_partials_array = Eigen::Array<T_partials_return, -1, 1>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:43:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/io/dump.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:16:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:277:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef]
62 | using T_alpha_val = typename std::conditional_t<
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:32:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef]
83 | using Block_ = Eigen::Block<Eigen::MatrixXd>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:34:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef]
32 | using T_scalar = value_type_t<T>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:49:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun.hpp:71:
/data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef]
64 | using value_t = value_type_t<VarMat>;
| ^
In file included from stanExports_binomial_2par.cc:5:
In file included from ./stanExports_binomial_2par.h:25:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/model_header.hpp:15:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing.hpp:8:
/data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef]
349 | using pair_type = std::pair<int, arena_vec>;
| ^
142 warnings generated.
/usr/local/clang17/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"../inst/include" -I"/data/gannet/ripley/R/test-clang/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/rstan/include' -I'/data/gannet/ripley/R/test-clang/StanHeaders/include' -isystem /usr/local/clang17/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c stanExports_normal.cc -o stanExports_normal.o
In file included from stanExports_normal.cc:3:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:128:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/routines.h:26:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
In file included from stanExports_normal.cc:3:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:27:
In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:181:
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
30 | Rf_warningcall(call, s.c_str());
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
30 | Rf_warningcall(call, s.c_str());
| ^
| "%s",
In file included from stanExports_normal.cc:5:
In file included from ./stanExports_normal.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:1:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Core:540:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_normal.cc:5:
In file included from ./stanExports_normal.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/LU:47:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_normal.cc:5:
In file included from ./stanExports_normal.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:12:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Jacobi:29:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_normal.cc:5:
In file included from ./stanExports_normal.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:43:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_normal.cc:5:
In file included from ./stanExports_normal.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/QR:15:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Householder:27:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_normal.cc:5:
In file included from ./stanExports_normal.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/QR:48:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from stanExports_normal.cc:5:
In file included from ./stanExports_normal.h:23:
In file included from /data/gannet/ripley/R/test-clang/rstan/include/rstan/rstaninc.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SVD:48:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: